Table 1.

Nucleotide and amino acid substitutions in the informative sites of genotype I.

Nucleotide						Protein				Domains
		Genotype I
Position		Lineage		Lineage II		Position	Lineagen		Type of amino acid Changes
				Sub-Lineage
Gene	Codon	I	II	I	II	Protein	I	II		I
48	3	G	A
135	3	T	C
174	3	G	A							II
202	1	A	G			68	I	V	Conservative
219	3	A	G
222	3	T	C
282	3	T	C
342	3	G	A
366	3	A	G
393	3	A	G
441	3			T	C					I
474	3	T	C
506	2	C	T			169	A	V	Conservative
516	3	T	C
537	3	C	T
588	3	A	G							II
633	3	C	T
640	1	T	C
645	3	C	T
663	3			A	G
684	3	T	C
692	2	G	A			231	R	K	Conservative
714	3	T	C
735	3			G	A
759	3	A	G
777	3	T	C
849	3			T	C					I
909	1	A	G			303	T	A	Nonconservative	III
912	3			C	T
1101	3	T	A
1153	1	C	T
1172	2	G	A			391	R	K	Conservative
1269	3	G	A							TM
1281	3	G	A
1302	3	C	G
1317	3	G	A
1329	3			A	G
1380	3	C	T
1436	2	C	T			479	A	V	Conservative
1466	2	T	C			489	V	A	Conservative

Domain I: 1–156^nt (1–52^aa); 397–573^nt (133–191^aa); 835–882^nt (279–294^aa)

Domain II: 157–396^nt (53–132^aa); 574–834^nt (192–278^aa)

Domain III: 883–1176^nt (295–392^aa)

Domain TM: 1177–1479^nt (393–493^aa)

nt:are indicated the nucleotide positions

aa::are indicated the amino acid positions