Table 5. We used the cmsearch utility provided with Infernal to search for homology to known ncRNA families in our intergenic filtered prediction set.

	Overlap with other ncRNA gene sets:
	Predictions	RNAz	EvoFold	[13]
tRNA	2	1
miRNA	22	2	1	2
snoRNA	36	8
other	54	13

Results reported here had a bit score>16.4 (see “Screening predictions against RFAM” for details).