Table 2.
RNA:ligand | GR:Xanthine | GR:2FA | GR:OMG | GR:6ClG | GRA:OMG | GRA:6ClG | GR(A21G/U75C): 6ClG | GR:2AP |
---|---|---|---|---|---|---|---|---|
Data collection | ||||||||
Space group | C2 | C2 | C2 | C2 | C2 | C2 | C2 | C2 |
Cell dimensions | ||||||||
a, b, c (Å) | 131.35, 35.10, 42.25 | 132.46, 35.08, 41.89 | 133.18, 35.27, 42,12 | 132.10, 35.12, 41.81 | 130.94, 35.04, 42.19 | 132.60, 35.17, 41.79 | 132.51, 35.12, 41.76 | 127.42, 35.16, 42.24 |
β(°) | 90.38 | 90.10 | 90.45 | 90.03 | 89.16 | 90.38 | 90.57 | 91.18 |
Resolution (Å) | 20-1.90 (1.97-1.90)a | 20-1.95 (2.02-1.95) | 20-1.85 (1.92-1.85) | 20-1.56 (1.62-1.56) | 20-2.15 (2.23-2.15) | 20-1.8 (1.86-1.80) | 20-2.1 (2.18-2.10) | 20-2.4 (2.49-2.4) |
Rmerge | 0.064 (0.197) | 0.059 (0.315) | 0.066 (0.323) | 0.080 (0.377) | 0.096 (0.357) | 0.048 (0.201) | 0.085 (0.352) | 0.080 (0.284) |
I/σI | 10.2 (3.2) | 10.2 (3.2) | 11.1 (2.0) | 13.1 (2.1) | 11.6 (3.0) | 15.8 (3.8) | 8.5 (3.5) | 8.1 (3.0) |
Completeness (%) | 95.6 (80.6) | 95.6 (80.6) | 88.1 (53.1) | 99.0 (94.0) | 90.9 (91.4) | 91.8 (69.5) | 98.8 (97.6) | 94.2 (86.0) |
Redundancy | 3.58 (3.21) | 3.58 (3.21) | 3.22 (2.48) | 6.73 (5.49) | 6.65 (6.67) | 3.56 (3.31) | 4.91 (4.94) | 1.83 (1.12) |
Refinementb | ||||||||
Resolution (Å) | 20-1.90 | 20-1.95 | 20-1.90 | 20-1.70 | 20-2.15 | 20-1.90 | 20-2.1 | 20-2.4 |
Rwork / Rfree | 21.0/24.6 | 21.8/26.8 | 22.6/27.6 | 21.6/23.4 | 23.8/28.3 | 22.7/25.1 | 22.0/25.6 | 22.9/27.8 |
Average B-factors (Å2) | 26.6 | 39.8 | 34.9 | 28.1 | 40.1 | 28.0 | 40.0 | 40.1 |
Luzzati error (Å)c | 0.28 | 0.39 | 0.36 | 0.24 | 0.47 | 0.29 | 0.37 | 0.43 |
rmsd bond lengths (Å) | 0.004 | 0.013 | 0.012 | 0.003 | 0.005 | 0.004 | 0.001 | 0.003 |
rmsd bond angles (°) | 1.1 | 1.6 | 1.70 | 0.9 | 1.0 | 1.0 | 1.0 | 0.6 |
PDBID | 3GAO | 3GOT | 3FO6 | 3GER | 3GES | 3FO4 | 3GOG | 3G4M |
Highest resolution shell is shown in parenthesis.
Refinement was against all data within the stated resolution range, with a random 10% omitted for use in calculation of Rfree
Cross-validated Luzzati coordinate error