Table 4.
Primary DNA vs Whole Genome Amplified DNA Analyzed on Illumina 610 Microarrays
| Sample1 Primary Isolate | Sample2 Whole Genome Amplified | No Call in one of the samples | No Call in Both Samples | Concordance | Discordance | Concordance Rate (%) |
| MOD 881 | WGA 881 | 31221 | 981 | 559134 | 1156 | 99.79 |
| MOD 892 | WGA 892 | 18592 | 1098 | 572300 | 502 | 99.91 |
| MOD 919 | WGA 919 | 27450 | 990 | 563096 | 956 | 99.83 |
| MOD 937 | WGA 937 | 16551 | 1075 | 574418 | 448 | 99.92 |
| MOD 920 | WGA 920 | 27354 | 1425 | 562951 | 762 | 99.86 |
| MOD 975 | WGA 975 | 26404 | 1758 | 563599 | 731 | 99.87 |
| MOD 986 | WGA 986 | 22113 | 1410 | 568375 | 594 | 99.9 |
| MOD 001 | WGA 001 | 33998 | 1850 | 555479 | 1165 | 99.79 |
Concordance between sample pairs was determined by Illumina BeadArray analysis.