Table 5.

Odds Ratios and corresponding 95% confidence intervals and credible intervals (Bayesian) for selected variants and for second stage covariates under Gibbs sampling, pseudo-likelihood methods, and diagnostic tests for the Gibbs sampler (p=passed, f=failed).

Level	Variant	Controls	Cases	Functional	Odds Ratios (95% CI)		Heidelberger tests
					Pseudo-likelihood	Bayesian	Stationary	Halfwidth
	c.50+37 G/C	15	6	no	0.8 (0.3–2.1)	0.8 (0.3–2)	p	p
	(−) 33 G>C	9	6	no	1.2 (0.4–3.3)	1.2 (0.4–3.3)	p	p
	(−) 34 G>T	2	7	no	6.4 (1.8–23.3)	8.9 (2–50.7)	p	p
	c.301 G>T	1	5	yes	7.3 (1.5–35.4)	10.0 (1.8–92.9)	p	p
	c.8_9ins	6	0	yes	0.7 (0.1–3.9)	0.3 (0.0–2.4)	p	p
	c.123 G>A	4	1	no	0.6 (0.1–3.6)	0.5 (0.0–3.1)	p	p
	(−) 14 C>T	2	1	no	0.8 (0.1–10.1)	1.1 (0.1–9.2)	p	f
	(−) 25 C>T	2	0	no	0.7 (0.1–6.8)	0.3 (0.0–5.7)	p	f
	c.373 G>C	3	0	yes	1.1 (0.2–7.6)	0.4 (0.0–4.9)	p	f
	c.87_89delG	2	0	yes	1.0 (0.1–7.6)	0.4 (0.0–5.5)	p	f
	c.318 G>A	2	1	yes	2.4 (0.4–15.0)	2.0 (0.2–15.0)	p	p
	c.159 G>A	1	2	yes	2.6 (0.4–16.4)	2.6 (0.3–26.5)	p	p
	c.159 G>C	1	1	yes	2.7 (0.4–19.3)	2.4 (0.2–28.0)	p	p
	c.334 C>G	0	2	yes	8.0 (1.1–59.6)	16.9 (1.3–1072.8)	p	p
	c.170 C>T	0	2	yes	4.7 (0.5–40.5)	8.4 (0.6–507.2)	p	p
	c.95 T>C	0	2	yes	9.0 (1.2–65.3)	19.4 (1.5–1126.6)	p	p
	(−) 70 G/A	0	1	no	2.0 (0.2–19.6)	4.1 (0.2–245.7)	p	p
	c.146 T>G	0	1	yes	4.9 (0.5–44.9)	8.5 (0.5–641.6)	p	p
	c.247 C>T	0	1	yes	5.9 (0.7–53.2)	10.6 (0.6–769.7)	p	p
	c.67 G>A	0	1	yes	5.1 (0.6–46.1)	5.2 (0.3–370.2)	p	p
	c.249 C>A	1	0	yes	1.7 (0.2–15.5)	0.8 (0.0–15.0)	p	f
	c.370 C>T	1	0	yes	2.0 (0.2–19.1)	1.0 (0.0–17.7)	p	f
	c.384 G>A	1	0	no	0.8 (0.1–8.3)	0.4 (0.0–9.4)	p	f
	c.67 G>C	1	0	yes	2.0 (0.2–19.5)	1.0 (0.0–20.5)	p	f
2nd stage				Functional	2.8 (1.4–5.9)	2.4 (0.7–6.8)
				τ̂	1.2	1.9