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. 2009 Jun 5;37(14):4657–4671. doi: 10.1093/nar/gkp469

Figure 1.

Figure 1.

The Jdp2 locus. (A) The number of integration events around Jdp2 as identified by retroviral tagging are shown in 5000 bp bins from positions 86 370 000 to 86 555 000 on chromosome 12 (UCSC mm8 February 2006) (top). The bars below and above the horizontal axis represent negative and positive, respectively, transcriptional orientation of the proviruses relative to that of the Jdp2 gene. Proviral integration clusters A through F are shown with clusters B and D highlighted in gray. A structure of the Jdp2 gene based on RefSeq NM_030887 is depicted at its chromosomal location (marked with a bracket) with the coding sequence indicated by black coloring (bottom). (B) Close-up on integration cluster D [genome coordinates 86 509 000–86 523 000, marked with a bracket in (A)] in the 3′ end of intron 2 and exon 3 with provirus position and transcriptional orientation depicted as in (A) using 500 bp bins. Schematic examples of provirus-host chimeric transcripts identified are shown with black and gray boxes indicating Jdp2 exon 3 and intron 2 sequences, respectively.