Table 2.
Affymetrix probe set ID, accession number, E value, and annotation of genes in Barley 1 GeneChip that were differentially expressed in three barley genotypes between control and drought-stress conditions
| Contig IDa | Accession no.b | E-valuec | Annotation | Presence of maximum value of transcriptional changes |
|||
| Genotype | Time point | FDR corrected value | Log2 ratio | ||||
| Genes differentially expressed in all three genotypes | |||||||
| Contig4430_at | Unknownd | HS41-1 | 5 d | 2.3E-05 | 3.03 | ||
| Contig13656_at | Unknown | Martin | 3 d | 9.2E-07 | 3.88 | ||
| Contig24415_at | Unknown | Martin | 3 d | 1.2E-06 | 5.66 | ||
| HY09M19u_s_at | Unknown | HS41-1 | 1 d | 3.8E-05 | 6.30 | ||
| Contig8340_at | NP_030664.1 | 9E-94 | Unknown | Moroc9-75 | 5 d | 5.6E-05 | 3.61 |
| Contig15276_at | BAB62547.1 | 1E-45 | Unknown | HS41-1 | 3 d | 2.5E-05 | 3.46 |
| Contig16113_at | AAM53278.1 | 4E-11 | Unknown | HS41-1 | 3 d | 2.8E-05 | 4.91 |
| Contig21426_at | NP_201140.1 | 5E-06 | Unknown | Moroc9-75 | 5 d | 3.8E-05 | 4.16 |
| Contig8961_at | T02663 | 9E-17 | Abscisic acid- and stress-induced protein | Martin | 3 d | 4.2E-06 | 3.69 |
| rbah48h06_s_at | AAL92880.1 | 6E-84 | Fructosyltransferase | Moroc9-75 | 1 d | 2.5E-05 | 5.89 |
| Contig2012_s_at | S72544 | 8E-57 | Heat shock protein 17.9 | HS41-1 | 5 d | 4.6E-05 | 4.52 |
| Contig873_s_at | AAB99745.1 | 1E-115 | HSP70 | Moroc9-75 | 3 d | 2.8E-05 | 3.33 |
| Contig11041_at | AAD09209.1 | 0.0004 | Late embryogenesis abundant protein | Martin | 3 d | 9.2E-07 | 4.37 |
| rbasd16a13_s_at | S28872 | 9E-09 | Non-specific lipid transfer protein | Moroc9-75 | 5 d | 6.4E-05 | 3.95 |
| Contig21613_at | BAB89059.1 | 7E-35 | PDI-like protein | Martin | 5 d | 3.1E-06 | 4.30 |
| Contig13161_at | BAC05575.1 | 4E-69 | Protein phosphatase 2C-like protein | Martin | 3 d | 1.7E-06 | 3.65 |
| Contig3814_at | BAB64280.1 | 1E-122 | Δl-pyrroline-5-carboxylate synthetase | Martin | 3 d | 8.4E-07 | 7.08 |
| Contig15719_at | NP_180081.1 | 5E-31 | CBL-interacting protein kinase 16 | Moroc9-75 | 5 d | 9E-05 | 3.08 |
| Genes differentially expressed in Martin and HS41-1 | |||||||
| Contig5034_at | Unknown | Martin | 3 d | 1.1E-06 | 2.96 | ||
| Contig12748_at | Unknown | Martin | 3 d | 1.8E-06 | 4.76 | ||
| HS05D20u_s_at | Unknown | HS41-1 | 5 d | 5E-05 | 2.85 | ||
| EBem09_SQ001_O02_s_at | Unknown | Martin | 3 d | 3.4E-05 | 3.26 | ||
| basd23g06_s_at | Unknown | Martin | 5 d | 6.8E-05 | 4.84 | ||
| Contig6830_at | AAD27569.1 | 2E-96 | Unknown | Martin | 3 d | 1.6E-05 | 3.11 |
| Contig7437_at | AAN05517.1 | 4E-86 | Unknown | Martin | 3 d | 4.9E-07 | 6.05 |
| Contig2924_s_at | AF323586.1 | 1.4E-72 | Aldehyde dehydrogenase | Martin | 3 d | 9.2E-07 | 5.01 |
| HVSMEa0007I03r2_at | AF527606 | 2E-47 | Iron/ascorbate-dependent oxidoreductase | Martin | 3 d | 3.1E-06 | 4.97 |
| Contig1724_s_at | AAD02255.1 | 6E-19 | Dehydrin 3 | Martin | 3 d | 2.3E-06 | 7.38 |
| Contig10029_at | AF350423.1 | 1.7E-20 | Small heat shock protein HSP17.8 | HS41-1 | 5 d | 2E-05 | 4.72 |
| Contig10522_at | NP_059065.1 | 1E-05 | γ-aminobutyric acid (GABA A) receptor | Martin | 1 d | 7.7E-08 | 4.94 |
| Contig9971_at | AAL87189.1 | 5E-82 | Putative amino acid transport protein AAP2 | Martin | 3 d | 1.4E-05 | 3.14 |
| Contig4095_s_at | AB098063.1 | 5E-47 | Spermidine synthase | Martin | 3 d | 3.7E-06 | 3.10 |
| Contig6208_at | AAK20047.1 | 3E-84 | C-4 sterol methyl oxidase | HS41-1 | 3 d | 4.7E-05 | 7.10 |
| HVSMEi0006K11r2_at | BAB91939.1 | 1E-32 | NADP dependent malic enzyme | Martin | 3 d | 8.4E-07 | 5.49 |
| Contig10726_at | AAC72195.1 | 1E-100 | Pyruvate dehydrogenase E1 α subunit | Martin | 3 d | 2.4E-05 | 4.02 |
| Genes differentially expressed in Martin and Moroc9-75 | |||||||
| rbags13d01_s_at | Unknown | Martin | 3 d | 3.1E-06 | 2.79 | ||
| Contig23817_at | Unknown | Martin | 3 d | 1.7E-06 | 2.67 | ||
| Contig26247_at | Unknown | Moroc97-5 | 1 d | 4.6E-05 | 3.74 | ||
| S0000200065C10F1_at | Unknown | Martin | 3 d | 5E-06 | 4.81 | ||
| Contig9143_at | Unknown | Martin | 1 d | 1.2E-06 | 5.43 | ||
| Contig15682_at | Unknown | Martin | 3 d | 9.5E-07 | 6.56 | ||
| Contig5609_at | CAD41089.1 | 9E-57 | Unknown | Moroc97-5 | 5 d | 6.4E-05 | 2.24 |
| Contig15773_at | NP_565890.1 | 3E-06 | Unknown | Martin | 3 d | 9.2E-07 | 5.93 |
| Contig19029_at | AAD43561.1 | 7E-62 | Bacterial-induced peroxidase precursor | Martin | 3 d | 5.8E-07 | −6.53 |
| Contig2864_at | T02128 | 5E-42 | β-glucosidase homolog F8K4.3 | Martin | 5 d | 1.6E-05 | 2.97 |
| HVSMEa0006I22r2_s_at | AAD02262.1 | 0.0001 | Dehydrin 5 | Martin | 1 d | 1.2E-06 | 6.96 |
| Contig1718_s_at | AAD02260.1 | 3E-30 | Dehydrin 9 | Martin | 1 d | 1.8E-05 | 5.60 |
| Contig8538_at | Q99090 | 2E-35 | Light-inducible protein CPRF-2 | Martin | 3 d | 5E-06 | −2.77 |
| Contig8246_at | AAK27799.1 | 1E-93 | Putative amylase | Martin | 5 d | 5.8E-07 | 4.05 |
| Contig7712_at | AAK15441.1 | 4E-97 | Putative nitrate transporter | Martin | 3 d | 4.5E-06 | −3.74 |
| Contig11696_at | BAB89728.1 | 5E-66 | Putative peptide chain release factor subunit 1 | Martin | 5 d | 9.2E-07 | 4.89 |
| Contig8641_at | NP_181401.1 | 1E-108 | Ethanolamine-phosphate cytidylyltransferase | Martin | 1 d | 4.3E-06 | 2.99 |
| Contig14687_at | CAD21000.1 | 3E-31 | Putative potassium transporter | Martin | 1 d | 1.7E-06 | 2.44 |
| Contig14224_at | AAL14615.1 | 8E-13 | Putative sugar transporter | Martin | 5 d | 6.7E-05 | −3.30 |
| Contig422_at | AAB18209.1 | 1E-132 | Chlorophyll a/b -binding protein | Martin | 3 d | 2.4E-06 | −6.01 |
| Genes differentially expressed in HS41-1 and Moroc9-75 | |||||||
| Contig2717_s_at | T06489 | 2E-44 | Peptidylprolyl isomerase FKBP77 | HS41-1 | 3 d | 1E-04 | 3.46 |
a
Indicates probe set in Affymetrix Barley 1 GeneChip.
b
Gene accession no. in GenBank.
c
E-value in BLAST between probe set in Barley 1 GeneChip with known genes in NCBI database.
d
‘Unknown’ represents no protein name or function based on the annotation of Barley 1 GeneChip released in July 2008.