Table 3.
Summary of 12 genes whose 5' ends of mRNA were analyzed by primer extension assays.
| Gene # | ID | Promoter elements validated | In agreement with microarray data | In agreement with PromScan |
|---|---|---|---|---|
| Up-regulated according to microarray analysis | ||||
| GSU0364 | ppcB | RpoD | Yes | Yes |
| GSU1836 | glnB | RpoN | No | Yes |
| GSU2005 | ABC transporter | RpoD | Yes | No |
| GSU2302 | Trehalose phosphatase | RpoD | Yes | Yes |
| GSU2490 | Oxalate-formate antiporter | RpoD | Yes | No |
| GSU2751 | dcuB | RpoN | Yes | Yes |
| GSU3206 | dksA | RpoD | Yes | No |
| Down-regulated according to microarray analysis | ||||
| GSU0420 | fliL | RpoN | Yes | Yes |
| GSU0777 | fdnG | RpoN | Yes | Yes |
| GSU0939 | PII | RpoD | Yes | No |
| GSU2806 | nifEN | RpoN | Yes | Yes |
| GSU3046 | flgJ | RpoN | Yes | Yes |