Table 1. Input-Seq coverage of transcription factor binding sites.
| Transcription Factor | Total Binding Sites in the Genome | median input-Seq reads |
| STE12 | 179 | 16 |
| DIG1 | 161 | 17 |
| FKH2 | 62 | 19 |
| PHO2 | 90 | 19 |
| TEC1 | 55 | 19 |
| CIN5 | 82 | 20 |
| DAL82 | 40 | 20 |
| FKH1 | 61 | 20 |
| MCM1 | 43 | 20 |
| YAP6 | 65 | 20 |
| MBP1 | 124 | 21 |
| NDD1 | 61 | 21 |
| ABF1 | 151 | 22 |
| REB1 | 154 | 22 |
| UME6 | 72 | 22 |
| YAP7 | 50 | 22 |
| GCN4 | 106 | 23 |
| GLN3 | 52 | 23 |
| RPN4 | 47 | 24 |
| SWI5 | 91 | 25 |
| GCR2 | 45 | 26 |
| ACE2 | 40 | 29 |
| FHL1 | 70 | 29 |
| MSN2 | 81 | 29 |
| MSN4 | 68 | 29 |
| SWI6 | 164 | 29 |
| CBF1 | 115 | 30 |
| SWI4 | 143 | 31 |
| NRG1 | 67 | 33 |
| RAP1 | 66 | 35 |
| SOK2 | 91 | 38 |
| PHD1 | 172 | 40 |
| HAP1 | 60 | 50 |
| RCS1 | 54 | 52 |
| AFT2 | 66 | 69 |
| SKN7 | 130 | 82 |
| SUT1 | 140 | 88 |
Transcription factors with 40 or more binding sites throughout the genome, per factor. The third column shows the median input-Seq read counts for all of the 100 bp windows that encompass the corresponding transcription factor's binding sites.