Table 2. Candidate regions assayed for shearing and DNA level.

Region	Chromosome	Start	Stop	Median S. cer input-Seq reads	Median S. cer/S. bay input-Seq reads	Median genomic reads
Entire Genome	-	-	-	16	126	8
ACT1	VI	53,843	53,969	23	127	7
HMRa1	III	293,833	294,104	7	47	6
Subtelomere	V	564,442	564,621	6	54	10
TRA1	VIII	307,328	307,462	7	61	7
RPL26A Promoter	XII	818,802	818,971	46	238	7

Chromosome positions of the probes used in the DNA blots to test for shearing differences. The median input-Seq and genomic sequence reads counts are over the indicated intervals for each region. The same five regions were tested in the Q-PCR experiments for their DNA levels in input and genomic samples.