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. 2009 Jun 19;75(16):5209–5217. doi: 10.1128/AEM.00888-09

TABLE 3.

Identities and similarities between PsrA, PsrB, and PsrC homologs

Protein Shewanella spp.a
S. Typhimurium LT2
GenBankb
Sim %ID E value Sim %ID E value Best hit Sim %ID E value
PsrA 85-98 75-96 0.0 73 56 0.0 W. succinogenes 65 47 0.0
PsrB 90-99 79-98 10−87-10−107 71 54 10−57 W. succinogenes 80 65 10−63
PsrC 66-99 51-96 10−57-10−137 59 40 10−38 W. succinogenes 67 45 10−62
a

Percentages of sequence similarity (Sim), percentages of identity (%ID), and expect values (E values) between S. oneidensis Psr predicted amino acid sequences obtained from TIGR. Ranges were determined by pairwise comparison with translated sequence data from draft genome sequences of 17 recently sequenced Shewanella strains, including S. putrefaciens 200, S. putrefaciens CN32, S. putrefaciens W3-18-1, S. amazonensis SB2B, S. denitrificans OS217, S. baltica OS195, S. frigidimarina NCIMB400, S. pealeana ATCC 700345, S. woodyi ATCC 51908, Shewanella strain ANA-3, Shewanella strain MR-4, Shewanella strain MR-7, S. loihica PV-4, S. halifaxensis, S. piezotolerans, S. benthica, and S. sediminis.

b

Organism outside the genus Shewanella or Salmonella, with the ortholog of highest similarity (best hit) determined by BLASTP analysis of the nonredundant GenBank database.