Skip to main content
. 2009 Jul 6;75(16):5363–5372. doi: 10.1128/AEM.00658-09

TABLE 2.

Summary of potentially pathogenic bacterial sequences for bacteria in shower water and air samples from a stem cell transplant unita

Season Sample Riser No. of sequencesb Sequence ID Method of detection Class/phylum % IDc Nearest relative for potential pathogens
Summer Water A 88/247 4S_4g02 Direct extraction Actinobacteria 99.5 Mycobacterium mucogenicum
9/10 4S_isolate4 Culture Actinobacteria 99.6 Mycobacterium mucogenicum
B 19/24 11S_isolate3 Culture Actinobacteria 99.5 Mycobacterium mucogenicum
Aerosol A 3/250 6S_3a07 Direct extraction Gammaproteobacteria 99.3 Pseudomonas aeruginosa
B 1/151 13S_2f07 Direct extraction Alphaproteobacteria 97.6 Bosea thiooxidans
Winter Water C 2/8 4W_isolate2 Culture Firmicutes 99.9 Bacillus cereus
a

Summary of potentially pathogenic bacterial sequences for bacteria, their percent ID to a known sequence in a public database, and their relative abundance in shower water or shower aerosol samples from four different hot water risers in a stem cell transplant unit during two seasons.

b

For sequences detected by direct extraction, the number of similar sequences to the total number of sequences assessed for each season and riser is shown. For sequences detected by culture, the number of similar CFU to the the total number of CFU isolated for each season and riser is shown.

c

Percent ID values based on RDP sequence match near-neighbor identification.