Table 1.
A list of His-Asp phosphorelay-associated components found in the whole genome sequence of L. japonicus
| Signaling components | Clone and SGA-sequence | Nomenclature | Characteristic remarks |
|---|---|---|---|
| Histidine kinases | chr2.LjB11M03.80 | CK-1 | Cytokinin receptor |
| chr4.CM0042.1660 | CK-2 (LHK1) | Cytokinin receptor35,36 | |
| LjT24E07.10 | CK-3 | Cytokinin receptor (a part of N-terminus is missing) | |
| chr1.LjT14G19.40 | ET-1 | Ethylene receptor | |
| chr3.CM0634.490 | ET-2 | Ethylene receptor | |
| chr5.LjT09B23.140 and 150 | ET-3 | Ethylene receptor (possibly incorrect annotation) | |
| LjB14K02.50 | ET-4 | Ethylene receptor | |
| LjT24A04.50 | ET-5 | Ethylene receptor | |
| chr2.CM0695.410 | HK1a | Homologous to AtHK1 (a part of HK and RR domain is missing) | |
| LjSGA_031835.1 | HK1b | Homologous to AtHK1 (partial, highly similar to HK1a)) | |
| chr2.CM0545.200 | HK2a | Homologous to CKI1 (a part of RR is missing ) | |
| chr5.CM0239.360 | HK2b | Homologous to CKI1 | |
| chr1.CM0133.1270 | HK3a | Homologous to AHK5 | |
| chr5.CM0040.380 | HK3b | Homologous to AHK5 | |
| chr4.LjT06I07.90 | CSKp1 | Homologous to CSK (fragmental) | |
| chr4.LjT06I07.40 | CSKp2 | Homologous to CSK (fragmental) | |
| HPt factors | chr5.LjT17N18.30 | HP1 | |
| chr6.CM1829.110 | HP2 | ||
| LjSGA_017645.1 | HP3 | ||
| chr5.LjT17N18.30 | HP4 | ||
| chr2.CM0065.180 | HP5a | His residue is missing (180 and 190 are repetitive) | |
| chr2.CM0065.190 | HP5b | His residue is missing (180 and 190 are repetitive) | |
| chr3.CM0142.400 | HP6 | His residue is missing | |
| Type A RRs | chr1.CM0027.130 | RRa1 | Induced by cytokinin |
| chr1.CM0320.150 | RRa2 | Induced by cytokinin | |
| chr2.CM0028.90 | RRa3 | Induced by cytokinin | |
| chr3.LjT48P15.80 | RRa4 | Induced by cytokinin | |
| LjB09A03.90 | RRa5 | Induced by cytokinin | |
| LjT47H21.100 | RRa6 | Induced by cytokinin | |
| chr4.LjT30K03.10 | RRa7 | (A part of C-terminus is missing ) | |
| Type B RRs | chr5.CM0072.230 and 220 | RRb1 | (Possibly incorrect annotation) |
| chr5.CM0345.260 | RRb2 | ||
| chr5.LjT32I14.90 | RRb3 | ||
| chr6.CM0037.920 | RRb4 | ||
| CM1729.100 | RRb5 | ||
| LjSGA_022114.1 | RRb6 | ||
| LjSGA_066155.1 | RRb7 | Most likely identical to a part of RRb4 | |
| chr1.LjT03I11.150 | RRb8 | (GARP-motif is missing) | |
| chr4.CM0042.1440 | RRb9 | (Asp residue in RR is missing) | |
| chr4.CM0229.220 | RRb10 | (Asp residue in RR is missing) | |
| LjSGA_012431.2 | RRb11 | (Asp residue in RR is missing) may be identical to a part of RRb10 | |
| Type C RRs | chr1.LjT07G07.80 | RRc1 | (Similar to RR-A, but not induced by cytokinin) |
| Anomalous RRs | chr1.CM0133.1320 | (Fragmental) | |
| chr2.CM0695.400 | (Fragmental) | ||
| LjSGA_054723.1 | TCP34 | (Fragmental) | |
| Clock-associated PRRs | chr4.CM0087.600 | PRR1 | Circadian rhythm (Homologous to TOC1) |
| LjT08O17.180 + 130 + 120 | PRR3 | (A large insertion between 180 and 130) | |
| chr1.CM0105.560 | PRR5 | Circadian rhythm | |
| chr3.LjT05P05.60 | PRR7 | Circadian rhythm | |
| chr3.CM0208.230 | PRR9 | Circadian rhythm | |
| Other clock components | chr3.CM0208.430 | LHY | or CCA1 |
| chr3.CM0792.160 | LUX | Also known as PCL1 |