Table I.
b-Type heme |
c-Type heme |
Sum |
|||||
---|---|---|---|---|---|---|---|
Occurrence | [%] | Occurrence | [%] | Occurrence | [%] | ||
Redundant | His-His | 149 | 6.5 | 603 | 61.2 | 752 | 23.0 |
His-Met | 10 | 0.4 | 247 | 25.1 | 257 | 7.9 | |
His-Xaa | 14 | 0.6 | 31 | 3.1 | 45 | 1.4 | |
His-Ex | 1514 | 66.4 | 68 | 6.9 | 1582 | 48.4 | |
Xaa-Xaa | 4 | 0.2 | 0 | 0.0 | 4 | 0.1 | |
Xaa-Ex | 529 | 23.2 | 26 | 2.6 | 555 | 17.0 | |
Other | 61 | 2.7 | 10 | 1.0 | 71 | 2.2 | |
Total | 2281 | 985 | 3266 | ||||
Nonredundant | His-His | 17 | 23.9 | 42 | 68.9 | 59 | 44.7 |
His-Met | 1 | 1.4 | 10 | 16.4 | 11 | 8.3 | |
His-Xaa | 2a | 2.8 | 2a,b | 3.3 | 4 | 3.0 | |
His-Ex | 31 | 43.7 | 4 | 6.6 | 35 | 26.5 | |
Xaa-Xaa | 1c | 1.4 | 0 | 0.0 | 1 | 0.8 | |
Xaa-Ex | 17 | 23.9 | 2d | 3.3 | 19 | 14.4 | |
Other | 2 | 2.8 | 1 | 1.6 | 3 | 2.3 | |
Total | 71 | 61 | 132 |
Distribution of ligands to b- and c-type hemes in the redundant and nonredundant heme protein data sets used in this survey. Xaa, amino acids other than His and Met. These include Asn, Asp, Cys, Tyr, Glu, and Lys in the redundant data set. Nonredundant data set:
His-Tyr,
Lys-Met,
His-Cys,
Lys-Ex. Ex: denotes hemes without a 6th ligand or an exchangeable, nonamino acid ligand (e.g., O2).