Table 3.
Sola3 Sequences in Diverse Genomes
| Species | Family Name | Representative Accession No. | Coordinates | Element Length | TIR Length (bp) | TPase Length (aa) | Approximate Copy Number Per Haploid Genome |
| Aedes aegypti | Sola3-1_AA | AAGE02019464.1 | 918–6,944 | 6,027 | 666 | 1,030a | 1 |
| Branchiostoma floridae | Sola3-1_BF | ABEP01036107.1 | 12,713–3,802 | 8,912 | 1,124 | 1,125b | 1 |
| Sola3-2_BF | ABEP01046127.1 | 30,459–22,390 | 8,070 | 915 | 1,124b | 1 | |
| Sola3-3_BF | ABEP01035506.1 | 24,150–17,680 | 6,989c | 869 | 1,168 | 1 | |
| Caenorhabditis brenneri | Sola3-1_CB | Join ABEG01016303.1 | 5,537–1 | 6,050 | 800 | 1,174a | 3 |
| ABEG01018644.1 | 8,601–9,113 | ||||||
| Sola3-2_CB | ABEG01019204.1 | 45,615–38,768 | 6,848 | 990 | 1,326a | 2 | |
| Caenorhabditis remanei | Sola3-1_CR | AAGD02001381.1 | 31,790–26,729 | 5,062 | 824 | 982a | 2 |
| Glomus intraradices | Sola3-1_GI | AC156586 | 29,125–30,427 (partial) | — | — | — | — |
| Hydra magnipapillata | Sola3-1_HM | ABRM01000905.1 | 37,629–32,381 | 5,258 | 660 | 917 | 15 |
| Sola3-2_HM | ABRM01016154.1 | 3,908–9,855 | 5,948 | 878 | 832 | 47 | |
| Sola3-3_HM | ABRM01011843.1 | 19,260–13,214 | 6,048 | 643 | 935 | 100 | |
| Sola3-4_HM | ABRM01020192.1 | 2,706–7,963 | 5,270 | 669 | 980 | 15 | |
| Nematostella vectensis | Sola3-1_NV | Join ABAV01005678.1 | 7,254–8,715 | 5,079 | 770 | 863d | 3 |
| ABAV01005679.1 | 1–3,603 | ||||||
| Sola3-2_NV | Join ABAV01021624.1 | 7340–14318 | 7,618 | 1,011 | 1,166d | 1 | |
| ABAV01048567.1 | 5,800–6,421 | ||||||
| Sola3-3_NVe | ABAV01028097.1 | 57,661–53,079 | 4,599 | 665 | - | 8 | |
| Phytophthora sojae | Sola3-1_PS | AAQY01001585.1 | 19,300–13,540 | 5,773 | 47 | 1,238 | 3 |
| Sola3-2_PS | AAQY01000636.1 | join 40,639– 35,030, 32,781–31,120 | 7,271 | 18 | 904a | 1 | |
| Sola3-3_PS | AAQY01000635.1 | 41,400–35,358 | 6,043 | 33 | 1,215a | 1 |
a
Protein sequences are predicted: missing the start codon, or containing stop codons or small indels, or frame being shifted.
b
Predicted, containing four exons
c
The left TIR is incomplete, the element length and TIRs length are predicted.
d
Predicted based on XP_001625534, containing exons.
e
Sola3-3_NV is nonautonomous and is identical to previously identified unclassified repeat family, NVREP5, in Nematostella vectensis (Putnam et al. 2007).