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. Author manuscript; available in PMC: 2010 Feb 1.
Published in final edited form as: Eur J Med Chem. 2008 Apr 18;44(2):593–608. doi: 10.1016/j.ejmech.2008.03.040

Table A3.

Pair-wise Interaction Energies for 4 and 1 with CB1 R Binding Pocket Residues, Conformational Energy Expense for Each Ligand Dock and the Combined Energy for Each Ligand/CB1 R Complex.

Residues Compound 4 Compound 1

Coulomb (kJ/mol) vdW (kJ/mol) Coulomb (kJ/mol) vdW (kJ/mol)
K3.28 −92.84 −3.34 −72.02 −8.81
L3.29 −2.26 −13.49 0.53 −9.99
V3.32 0.71 −14.14 −1.04 −20.29
T3.33 −0.23 −4.78 −1.29 −11.01
F3.36 −4.32 −14.47 −1.11 −14.39
T3.37 0.05 −0.28 0.02 −2.86
I4.56 0.07 −0.46 −0.74 −3.61
Y5.39 −3.32 −6.69 −1.02 −6.59
W5.43 −1.41 −29.34 −0.70 −25.10
W6.48 −0.22 −0.76 −0.31 −0.84
I6.54 0.26 −5.21 0.25 −3.13
M6.55 1.48 −32.22 2.49 −28.36
D6.58 3.31 −15.72 5.67 −6.75
F7.35 −2.20 −9.98 −0.12 −1.03
C7.38 0.23 −5.28 −0.24 −0.61
S7.39 0.08 −4.81 −0.85 −5.75
C7.42 −0.65 −5.06 1.71 −6.03

SubTotal (kJ/mol) −101.27 −166.03 −68.77 −155.14
SubTotal (kcal/mol) −24.19 −39.66 −16.43 −37.05

Total (kJ/mol) −267.30 −223.91
Total (kcal/mol) −63.84 −53.48
Ligand Conf. Cost* (kcal/mol) 1.29 1.26

Combined Total (kcal/mol) −62.55 −52.22
*

Energy calculated at the HF-6-31G* level (see Experimental Section).