TABLE 3.
Summary statistics of the 10 loci for all the samples
| Locus | Location | n | L bp | indel | S | ηe | K | πtotal | θtotal | πs | θs | πns | θns | πsilent | θsilent | Dt | F | H | C | Hd |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| amyrel | 2R | 88 | 1640 (1482-57-101) | 19 | 12 | 2 | 15 | 1.14 | 1.47 | 3.3 | 2.5 | 0.6 | 0.9 | 2.1 | 2.4 | −0.59 | −0.07 | 1.45 | 0.002 | 0.7 (0.68–0.93) |
| cecropin | 3R | 34 | 1522 (353-61-1108) | 1 | 5 | 2 | 6 | 0.66 | 0.96 | 1.4 | 3 | 0.2 | 0.9 | 0.8 | 1 | −0.86 | −0.83 | 0.67 | ND | 0.72 (0.06–0.84) |
| janus-ocnus | 3R | 60 | 685 (240-62-383) | 0 | 1 | 0 | 2 | 0.14 | 0.31 | 0 | 0 | 0.5 | 1.1 | 0 | 0 | −0.70 | 0.19 | 0.09 | ND | 0.1 |
| Average automal | 2R–3R | 0.65 | 0.91 | 1.6 | 1.8 | 0.4 | 1.0 | 1.0 | 1.1 | −0.72 | −0.24 | 0.74 | ||||||||
| period | X | 92 | 757 (499-258-0) | 0 | 7 | 1 | 10 | 1.12 | 1.82 | 3.1 | 4.3 | 0.6 | 0.5 | 2.1 | 3 | −0.92 | −0.11 | 0.78 | 0.048 | 0.59 (0.33–0.86) |
| sqh | X | 82 | 1833 (525-64-1244) | 10 | 8 | 1 | 11 | 0.91 | 0.88 | 3.9 | 1.8 | 0 | 0 | 1.2 | 1.1 | 0.08 | 0.42 | 1.23 | 0.006 | 0.75 (0.31–0.83) |
| vermilion | X | 83 | 1498 (1053-355-90) | 0 | 3 | 0 | 4 | 0.22 | 0.4 | 1. | 1.6 | 0 | 0 | 0.5 | 0.9 | −0.83 | 0.38 | 0.30 | ND | 0.32 (0.09–0.69) |
| white | X | 81 | 1216 (889-327-0) | 0 | 6 | 0 | 7 | 1.18 | 0.99 | 1.9 | 0.9 | 0.5 | 0.6 | 2 | 1.5 | 0.44 | 1.07 | 1.07 | ND | 0.82 (0.25–0.79) |
| otu | X | 81 | 1388 (1047-341-0) | 0 | 4 | 0 | 6 | 0.68 | 0.58 | 2.2 | 2.5 | 0.5 | 0.25 | 0.9 | 1 | 0.34 | 0.89 | 0.58 | 0.005 | 0.52 (0.14–0.73) |
| pgd | X | 77 | 2191 (568-1498-125) | 0 | 7 | 2 | 10 | 0.82 | 0.65 | 6.3 | 4.5 | 0 | 0 | 1 | 0.8 | 0.65 | −0.11 | 0.69 | 0.019 | 0.77 (0.33–0.81) |
| zeste | X | 80 | 2154 (1164-182-808) | 0 | 3 | 1 | 4 | 0.15 | 0.28 | 0 | 0 | 0 | 0 | 0.3 | 0.5 | −0.88 | −0.75 | 0.29 | ND | 0.31 (0.07–0.69) |
| Average X linked | X | 0.73 | 0.80 | 2.7 | 2.2 | 0.2 | 0.2 | 1.1 | 1.3 | −0.16 | 0.25 | 0.71 | ||||||||
| All average | 2R–3R–X | 0.70 | 0.83 | 2.3 | 2.1 | 0.3 | 0.4 | 1.1 | 1.2 | −0.33 | 0.11 | 0.72 |
n, number of sequences; L, total length of the sequences in base pair (length of exon, intron, and intergenic sequences); S, number of polymorphic sites; ηe, number of unique mutation (singletons); K, number of haplotypes; π (× 103), nucleotidic diversity; θ (× 103), Watterson estimator (total, s, ns, and silent refer to all, synonymous, nonsynonymous, and silent sites); Dt, Tajima's D statistic; F, Fu and Li's F statistic; H, Fay and Wu's statistic; C, estimate of the population recombination rate per base pair (4Nc for autosomal loci; 3Nc for X-linked loci; ND, not determined); Hd, haplotypic diversity (95% confidence interval).