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. 2009 Aug 3;10:78. doi: 10.1186/1471-2199-10-78

Table 3.

Characteristics of gene-specific qPCR assays

Gene name
(synonym)
Genebank Access n°
Gene ID
Gene location Primer sequence 5'-3' Amplicon size PCR efficiency
ACTB
actin, beta
NM_001101
60
7p15-p12 f: tggctggggtgttgaaggtct
r: agcacggcatcgtcaccaact
238 1.98
ALAS1
aminolevulinate delta synthase 1, transcript variant 1
NM_000688
211
3p21.1 f: aacttgccaaaatctgtttc
r: ggtgatgagggagtctgaat
159 1.99
B2M
beta-2-microglobulin
NM_004048
567
15q21-q22.2 f: cagcgtactccaaagattca
r: gaatgctccactttttcaat
240 1.95
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
NM_002046
2597
12p13 f: tgaacgggaagctcactgg
r: tccaccaccctgttgctgta
307 1.90
HMBS
hydroxymethylbilane synthase, transcript variant 1
NM_000190
3145
11q23.3 f: gaaagacaacagcatcatgag
r: accaaggagcttgaacatgc
145 1.98
HPRT1
hypoxanthine phosphoribosyltransferase 1
NM_000194
3215
Xq26.1 f: ctgacctgctggattaca
r: gcgaccttgaccatcttt
256 1.90
K-ALPHA
tuba1a, tubulin
NM_006082
10376
12q13.12 f: cagatgccaagtgacaagac
r: tccaacacaaggtcaatgat
257 1.94
RPL27
ribosomal protein L27
NM_000988
6155
17q21.1-q21.2 f: tcgccaagagatcaaagataa
r: ctgaagacatccttattgacg
121 1.94
RPS18
ribosomal protein S18
NM_022551
6222
6p21.3 f: agcttgttgtccagaccatt
r: tgaggaaagcagacattgac
187 1.84
RPS29
ribosomal protein S29 transcript variant 2
NM_001030001
6235
14q f: gcactgctgagagcaagatg
r: ataggcagtgccaaggaaga
213 1.95
SDHA
succinate dehydrogenase complex, subunit A, flavoprotein
NM_004168
6389
5p15 f: agcaagctctatggagacct
r: taatcgtactcatcaatccg
200 1.80
TBP
TATA box binding protein
NM_003194
6908
6q27 f: cacgaaccacggcactgatt
r: ttttcttgctgccagtctggac
89 2.01