Table 5.

Common genes modulated by MSA as well as SM

Common genes up-regulated by MSA + SM:
Cell cycle/apoptosis	BIRC2, STK17A, ICEBERG,* CDC14A, TGFB2*
Cell-cell signaling/signal transduction	FGF12,* PPFIA1,* PRKAB2, RAB39B,* TGFB2*
Protein targeting/transport	SRP54, COPB2, SNX2, RAB39B*
Transcription regulation	TCF21, PEG3, ZNF154, CREB3, FBXO7*
Other functions	TRA1, NUCB2, GCA, ICEBERG,* MRCL3, MT2A, FGF12,* SEC63, EM1LIN3, PPFIAI,* GCC2, HLA-E, FLJ21934, IFRD1, NQO2, ORC41, SSR3, SV2B, FBXL6, RPL12, UBB, FBXO7*
Common genes down-regulated by MSA + SM:
Cell cycle/apoptosis	DAPK3,* PLK,* LOC283431, C20orfI50, CDKN2D, CCND1, TPX2, INHBB,* IGF1R,* PCAF,* MDM4, ERBB2,* RBBP6, LIMD1,* AURKB,* CDC25B, CDC25A, AKT1,* RBM5, LMNB2, MXD4,* ATF5,* LTBR*
Transcription regulation	CTDSPL, ZFD25, FLJ20259, TOX, POLR2A, LMO4,* RENT1, INHBB,* PCAF,* HTATSF1, ZNF481, GTF2F1, MADH2, LIMD1,* NCOA5, ELL2, TBX1, NR2F6,* TRAP95, MXD4,* ATF5,* SF1, MYBL2, NFIC, HOXB13, HEYL, ZNF287, HCFC1, KIAA1333
Metabolism	GCAT, NAGLU, CA14, MUS81, APOA4, MAN2A1, FLJ10851, PGAM2, TK1
Signal transduction	PRKCI,* FAT,* DAP4, EGFR,* GNAQ, DVL3, IGFIR,* ILIRI,* ERBB2,* LIMD1,* NMU, AKT1,* ARHGAP1, ARL5, STRN4, NR2F6,* LTBR*
Immune response	IGLL1, INHBB,* TRGV9, IL1R1,* IL6ST, TAPBP, LTBR*
Amino acid phosphorelation/dephosphorelation	DAPK3,* PLK,* DKFZP434C131, PRKC1,* STYX, AURKB,* KPI2, PTPN4, AKT1*
Electron transport	TXN2, LMO4,* EGFR,* CYP1B1, TXNRD2
Cell adhesion	FAT,* PCDHB5, CNTNAP2, PKP3, LAMC1
Other functions	SMC5L1, VARS2, VARS2L, SLC25A1, PGGT1B, KIAA0676, SLC25A13, TTS–2.2, SLC30A7, DLAT, DPP9, POLS, LIG3, DDT, AP4E1, FUT11, COPA, AP1GBP1, ENSA, SMCIL1, FNBP2, LRRN4, CPEB3, RBM14, FKBP14, GALNT2, KCNAB1, GEMIN7, SFRS10, C20orfl4, LRP6, FKBP8, PPP2R1A, SEC6, RNASEH2A, RNPC1, CLONE24922, MGC2408, LASP1, NUMAI, GPT2, HS2ST1, EIF4G1, IF2, NUP153, SLCO4A1, MDH2, THOP1

^*Gene appears in more than 1 category.