Table 1.
Duplex Abbreviation | Sequencea |
---|---|
U | 5′-GCGCAUAGTCGG-3′ 3′-CGCGTATCAGCC-5′ |
P | 5′-GCGGCCAAAFAAAAAAGCGC-3′ 3′-CGCCGGTTTPTTTTTTCGCG-5′ |
F | 5′--GCGCAFAGTCG-3′ 3′-CGCGTATCAGC-5′- |
Z | 5′-GCGCAZAGTCG-3′ 3′-CGCGTATCAGC-5′ |
| |
U-19 | 5′-GCGGCCAAAUAAAAAAGCGC-3′ 3′-CGCCGGTTTPTTTTTTCGCG-5′ |
Abbreviations: U, deoxyuracil; P, 2-aminopurine; F, tetrahydrofuran abasic site analogue; Z, 1-azadeoxyribose. The following nomenclature is used to identify the +2, +1, and −1 phosphates: 5′ GCGC+2-pA+1pU−1pAGTCGG 3′.