Table 2. SNPs genotyped in this study.
Marker number | dbSNP number | Alleles minor/major | Physical map location (bp) | bp to next marker | MAF in controls | Gene/type |
---|---|---|---|---|---|---|
1 | rs1015541 | A/C | 30 811 481 | 0 | 0.323077 | DCDC5 intron 31 |
2 | rs1448938 | T/C | 30 849 400 | 37 919 | 0.444882 | DCDC5 intron 28 |
3 | rs273573 | A/C | 30 867 567 | 18 167 | 0.326923 | DCDC5 intron 26 |
4 | rs395032 | A/G | 30 883 776 | 16 209 | 0.324427 | DCDC5 intron 20 |
5 | rs163881 | T/G | 30 904 820 | 21 044 | 0.326923 | DCDC5 intron 12 |
6 | rs7117074 | A/C | 30 942 663 | 37 843 | 0.432 | DCDC5 intron 10 |
7 | rs290102 | C/T | 30 972 073 | 29 410 | 0.453125 | DCDC5 intron 10 |
8 | rs288458 | G/C | 31 007 585 | 35 512 | 0.096 | DCDC5 intron 10 |
9 | rs560395 | G/A | 31 044 369 | 36 784 | 0.454545 | DCDC5 intron 8 |
10 | rs621549 | A/C | 31 070 773 | 26 404 | 0.461538 | DCDC5 intron 6 |
11 | rs208068 | G/A | 31 108 520 | 37 747 | 0.392308 | * |
12 | rs400964 | A/T | 31 133 836 | 25 316 | 0.386719 | * |
13 | rs16921914 | A/G | 31 167 347 | 33 511 | 0.305344 | * |
14 | rs286651 | T/C | 31 186 380 | 19 033 | 0.39313 | * |
15 | rs7937421 | C/T | 31 252 249 | 65 869 | 0.205426 | DCDC1 intron 7 |
16 | rs2774403 | A/T | 31 277 106 | 24 857 | 0.392308 | DCDC1 intron 6 |
17 | rs12577026 | A/G | 31 304 419 | 27 313 | 0.169231 | DCDC1 intron 3 |
18 | rs1547131 | C/T | 31 343 175 | 38 756 | 0.257692 | DCDC1 intron 1 |
19 | rs483534 | G/C | 31 354 718 | 11 543 | 0.350806 | DPH4 intron 2 |
20 | rs578666 | G/A | 31 361 060 | 6342 | 0.383721 | DPH4 intron 2 |
21 | rs6484503 | G/T | 31 381 179 | 20 119 | 0.32 | DPH4 intron 2 |
22 | rs1223118 | G/C | 31 427 076 | 45 897 | 0.00384615 | IMMP1L intron 5 |
23 | rs1223068 | G/T | 31 436 925 | 9849 | 0.25 | IMMP1L intron 4 |
24 | rs1223098 | T/G | 31 463 483 | 26 558 | 0.472222 | IMMP1L intron 1 |
25 | rs509628 | C/T | 31 491 931 | 28 448 | 0.480159 | ELP4 intron 1 |
26 | rs502794 | C/A | 31 503 803 | 11 872 | 0.484375 | ELP4 intron 2 |
27 | rs2996470 | T/C | 31 516 234 | 12 431 | 0.247826 | ELP4 intron 2 |
28 | rs2973127 | C/T | 31 519 594 | 3360 | 0.251908 | ELP4 intron 3 |
29 | rs2104246 | G/A | 31 530 222 | 10 628 | 0.246094 | ELP4 intron 3 |
30 | rs2996464 | C/T | 31 545 775 | 15 553 | 0.265385 | ELP4 intron 3 |
31 | rs2146569 | G/T | 31 565 684 | 19 909 | 0.244186 | ELP4 intron 3 |
32 | rs10835793 | T/A | 31 575 426 | 9742 | 0.25 | ELP4 intron 4 |
33 | rs1232182 | A/T | 31 589 144 | 13 718 | 0.267176 | ELP4 intron 5 |
34 | rs986527 | T/C | 31 593 057 | 3913 | 0.425197 | ELP4 intron 5 |
35 | rs11031434 | A/G | 31 609 788 | 16 731 | 0.492308 | ELP4 intron 6 |
36 | rs1232203 | A/C | 31 622 784 | 12 996 | 0.25 | ELP4 intron 7 |
37 | rs964112 | T/G | 31 635 524 | 12 740 | 0.414634 | ELP4 intron 9 |
38 | rs2862801 | A/G | 31 652 912 | 17 388 | 0.248062 | ELP4 intron 9 |
39 | rs10835810 | T/C | 31 679 060 | 26 148 | 0.425532 | ELP4 intron 9 |
40 | rs12365798 | C/T | 31 704 334 | 25 274 | 0.244275 | ELP4 intron 9 |
41 | rs2863231 | A/G | 31 753 136 | 48 802 | 0.380952 | ELP4 intron 9 |
42 | rs3026411 | A/T | 31 758 120 | 4984 | 0.334615 | ELP4 intron 9 |
43 | rs1506 | A/T | 31 766 874 | 8754 | 0.223077 | PAX6 3′ |
44 | rs2239789 | A/T | 31 772 472 | 5598 | 0.480769 | PAX6 intron 8 |
Asterisk (*) designates intergenic SNP.