Table 5.

Novel Small RNAs without Significant Hairpin Identified from FFPE Samples of a Melanoma Patient

Candidate sRNA	Sequences (5′−3′)	Size (nucleotides)	Total clones	Source	Location	Gene/intergenic exon/intron/UTR (S/AS)
sRNA-1	5′-CATGGTGAGCTGCCTTGGTCC-3′	21	1	+SLN	4p16.1	Intergenic
sRNA-2	5′-CAGGAAGATCATGAATTCCCC-3′	21	1	PCM	10p15.1	ASB13, intron (S)
sRNA-3	5′-CTGTTGGAGCTTTCTAGCCACATGTT-3′	26	1	PCM	10q25.3	TRUB1, intron (S)
sRNA-4	5′-CTATACAGGTAGTTATGCAAG-3′	21	2	+SLN	11p11.12	Intergenic
sRNA-5	5′-AATAGGAATTCACTGTATCT-3′	20	1	−SLN	11q23.3	GRIK4, intron (S)
sRNA-6	5′-ATTTTGGGTGGAAAACTGT-3′	19	2	−SLN	12q21.31	TMTC2, intron (AS)
sRNA-7	5′-AATGTTTAAAATGGGAAGAGA-3′	21	2	+SLN	13q31.3	Intergenic
sRNA-8	5′-AAGACTTTTTCTCTGACC-3′	18	1	+SLN	17p13.1	Intergenic
sRNA-9	5′-CTCTAGGCATGTGGCAGATATTA-3′	23	2	−SLN	1p21.2	AGL, intron (AS)
sRNA-10	5′-TTCTGCATTTCTTTCCTGT-3′	19	1	+SLN	3q27.3	AK057297, intron (S)
sRNA-11	5′-TTTCAGAAAGGGATGATC-3′	18	1	−SLN	4q12	Intergenic

Sequences listed represent the observed full-length sequence of each sRNA cloned. S, sense; AS, antisense; sRNA, small RNA.