Table 1.

List of HLA alleles, Allele frequencies normalized to 1, fraction of Falsely predicted epitope (FP) and fraction of measured epitope not predicted by the different algorithms. FP values were computed using 100,000 randome epitopes, while FN values were computed using measured epitopes. FN values of 0 were usually obtained when the number of observed epitopes was limited.

Allele	Normalized Frequency	False Positives	False Negative
A_2402	1.29E-01	2.87E-02	1.82E-01
A_0201	1.07E-01	6.16E-03	3.69E-01
Cw_0702	9.66E-02	2.52E-02	1.16E-01
Cw_0401	8.26E-02	1.99E-02	1.23E-01
A_1101	7.52E-02	5.90E-03	6.77E-02
B_4001	5.31E-02	1.89E-03	0.00E+00
Cw_0602	5.09E-02	2.09E-02	0.00E+00
A_0101	4.50E-02	3.38E-02	4.15E-01
A_0301	3.69E-02	2.36E-02	2.32E-01
B_0702	3.61E-02	1.64E-02	1.39E-01
B_3501	3.24E-02	1.56E-02	5.65E-02
B_5101	3.24E-02	7.85E-03	0.00E+00
B_0801	2.95E-02	1.87E-02	3.76E-01
B_5801	2.65E-02	3.36E-03	0.00E+00
A_3101	2.43E-02	7.45E-03	2.18E-01
B_4403	2.21E-02	8.77E-03	9.36E-02
B_1501	2.06E-02	3.78E-02	3.70E-02
A_6801	1.77E-02	7.68E-03	2.80E-01
B_3901	1.77E-02	1.01E-02	0.00E+00
B_0401	1.55E-02	5.95E-03	3.77E-01
B_2705	1.11E-02	6.61E-03	1.55E-01
A_0205	8.85E-03	1.18E-02	2.45E-01
B_5201	8.85E-03	7.26E-03	3.30E-01
B_3801	6.64E-03	1.04E-03	0.00E+00
B_4006	5.16E-03	7.18E-03	0.00E+00
B_3701	4.42E-03	1.57E-02	0.00E+00
B_5102	2.21E-03	3.60E-03	5.56E-02
B_2702	1.47E-03	3.50E-03	2.45E-02
A_3302	1.00E-03	1.37E-03	0.00E+00
B_40	1.00E-03	5.31E-03	4.95E-01
B_5103	1.00E-03	9.98E-03	0.00E+00