Table 2.
Summary of proteins and identified unique peptides for the tryptic digest of the influenza virus preparation.
| Peptides^ | |||
| Accession | Description | DDA | CDA – ETISEQ |
| P03466 | Nucleoprotein – Influenza A | MVLSAFDER (2+) | - |
| (Puerto Rico/8/1934 H1N1) | ASAGQISIQPTFSVQR (2+) | ASAGQISIQPTFSVQR (2/3+) | |
| TTIMAAFNGNTEGR (2+) | - | ||
| MMESARPEDVSFQGR (3+) | MMESARPEDVSFQGR (2/3+) | ||
| ESARPEDVSFQGR (2+) | ESARPEDVSFQGR (2+) | ||
| - | SARPEDVSFQGR (2+) | ||
| [10.8%] | [6.2%] | ||
| gi|33622382 | Hemagglutinin – Influenza A | EVLVLWGVHHPPNIGNQR (3+) | EVLVLWGVHHPPNIGNQR (3+) |
| (New Caledonia/20/1999 H1N1) | ALYHTENAYVSVVSSHYSR (3+) | ALYHTENAYVSVVSSHYSR (3+) | |
| - | HPPNIGNQR (2+) | ||
| [6.6%] | [6.6%] | ||
| gi|22859465 | Matrix protein 1 – Influenza A | QMVTTTNPLIR (2+) | QMVTTTNPLIR (2+) |
| (New Caledonia/20/1999 H1N1) | |||
| [5.2%] | [5.2%] | ||
| P01012 | Ovalbumin – Gallus gallus | GGLEPINFQTAADQAR (2+) | GGLEPINFQTAADQAR (2+) |
| NVLQPSSVDSQTAMVLVNAIVFK (3+) | - | ||
| AFKDEDTQAMPFR (3+) | - | ||
| LTEWTSSNVMEER (2+) | LTEWTSSNVMEER (2+) | ||
| ISQAVHAAHAEINEAGR (3+) | ISQAVHAAHAEINEAGR (3+) | ||
| [21.2%] | [11.9%] | ||
| P02789 | Ovotransferrin precursor – Gallus gallus | VEDIWSFLSK (2+) | - |
| YFGYTGALR (2+) | YFGYTGALR (2+) | ||
| GDVAFIQHSTVEENTGGK (3+) | - | ||
| ECNLAEVPTHAVVVRPEK (3+) | - | ||
| FMMFESQNK (2+) | - | ||
| [9.1%] | [1.3%] | ||
| P01014 | Ovalbumin-related protein Y – Gallus gallus | YNPTNAILFFGR (2+) | YNPTNAILFFGR (2+) |
| - | PTNAILFFGR (2+) | ||
| HSLELEEFR (2+) | HSLELEEFR (2+) | ||
| [5.4%] | [5,4%] | ||
^The sequence coverage of each protein is shown in square brackets. The data are acquired by DDA and CDA with ETISEQ processing. Note that the virus was cultured in 10–14 day old embryonic hen eggs (Gallus gallus) and therefore chicken proteins are expected.