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time and memory usage to map BAC data set to three reference genomes, for different seed weights
| Run | Weight-14 × 4 | Weight−13 × 4 | Weight−11 × 3 |
|---|---|---|---|
| BAC on MHC-162k | 00:00:40 (3.0G) | 00:00:37 (1.1G) | 00:00:38 (796M) |
| BAC on chr6 | 00:04:06 (3.0G) | 00:06:09 (1.1G) | 00:06:14 (796M) |
| BAC on all | 01:11:55 (3.0G) | 01:33:03 (1.1G) | 01:45:04 (796M) |
Higher weighted spaced seeds used more time to construct the hash tables, but consumed less total time on larger reference genome.
