Table 1.

The false positive rates and the correlation coefficients between P_PERT and P_NDE, as a function of the number of DE genes analyzed averaged over the three scenarios depicted in Figure 2

Nde	FP(ORA)	FP(SPIA)	R2
100	0.072	0.068	0.0022
300	0.045	0.048	0.0028
500	0.038	0.044	0.0032
1000	0.036	0.045	0.0041
2000	0.038	0.045	0.0041
5000	0.036	0.046	0.0002

The false positive rates and the correlation coefficients between P_PERT and P_NDE, as well as an average false positive rate at the expected 5% level.