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. 2008 Nov 5;25(1):75–82. doi: 10.1093/bioinformatics/btn577

Table 4.

SPIA results on the LaborC dataset

KEGG Pathway PNDE PPERT PG PFDRa PFWERb Status
Cytokine-c..4060 0.0000 0.0000 0.0000 0.0000 0.0000 Act.
ECM-recept..4512 0.0002 0.0008 0.0000 0.0001 0.0002 Act.
Complement..4610 0.0000 0.0652 0.0000 0.0003 0.0008 Inh.
Focal adhe..4510 0.0001 0.0384 0.0000 0.0004 0.0016 Act.
Renal cell..5211 0.0016 0.8032 0.0097 0.0804 0.4652 Act.
Jak-STAT s..4630 0.0028 0.4764 0.0100 0.0804 0.4823 Act.
Phosphatid..4070 0.0111 0.1968 0.0156 0.1067 0.7467 Act.
mTOR signa..4150 0.0238 0.2760 0.0396 0.2378 1.0000 Inh.
Regulation..4810 0.0198 0.5080 0.0563 0.2804 1.0000 Inh.
Type II di..4930 0.0533 0.2568 0.0724 0.2804 1.0000 Inh.
MAPK signa..4010 0.0211 0.6532 0.0729 0.2804 1.0000 Act.
Toll-like..4620 0.0282 0.5104 0.0754 0.2804 1.0000 Act.
Circadian..4710 0.1100 0.1320 0.0759 0.2804 1.0000 Inh.
Huntington..5040 0.1716 0.0996 0.0867 0.2971 1.0000 Inh.
Epithelial..5120 0.6281 0.0308 0.0957 0.3061 1.0000 Act.

abCalculated for PG; Act., activated, Inh., inhibited. The last pathway considered significant is underlined (FDR<0.05).