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. Author manuscript; available in PMC: 2009 Sep 23.
Published in final edited form as: Biochemistry. 2008 Aug 26;47(38):10227–10239. doi: 10.1021/bi800767t

Table 1.

Parameters for Deacetylation, Exchange, Hydrolysis and Inhibition Reactions for Pf-Sir2 with Various Substrates.

Deacetylation
Exchangeb
Hydrolysis
kcat Km Ki(NAM)a kcat Km kcat Km
10−4 s−1 ∝M ∝M 10−2 s−1 ∝M 10−3 s−1 ∝M
H3c 2.5 ± 0.4 372 ± 99 35 ± 2 2.5 ± 0.1 61 ± 5 1.9 ± 0.1 228 ± 28
H4c 3.5 ± 0.2 176 ± 23 NM NM NM 2.2 ± 0.1 137 ± 29
p300c 9.2 ± 0.5 85 ± 13 91 ± 4 6.4 ± 0.2 80 ± 7 3.4 ± 0.2 33 ± 15
NAD+d NA NA NA ND NA 1.2 ± 0.2 NM

Conditions for measurements are described in experimental section. All reactions conducted in the presence of 400 ∝M NAD+.

a

Ki(NAM) is the inhibition constant for nicotinamide inhibition of deacetylation. The values are determined by varying nicotinamide (NAM) concentrations, measuring deacetylation by HPLC and plotting rate of deacetylation versus NAM concentration. Fits of points to the inhibition curve described in experimental determines the value of the parameter.

b

The values are determined from the saturation curve for 14C-nicotinamide base-exchange.

c

Peptide primary sequence and acetylation are described in the materials and methods section. NM: Not Measured. ND: Not detected, highest concentration: 5 mM 14C-NAM.

d

No acetylated peptide is added to these reactions. NA: Not applicable.