Table 2.
CFA11 loss of heterozygosity.
| Feature* | Sequence type | Mb Distance From Top | LE blood genotype§ | LE tumour genotype | Observations |
| CAMC11.009 | Microsatellite | 4.985028 | 387, 387 | 387, 387 | |
| AHT137 | Microsatellite | 5.829562 | 148, 148 | 148, 148 | |
| REN161P13 | Microsatellite | 7.106779 | 189, 189 | 189, 189 | |
| CAMC11.008 | Microsatellite | 8.593416 | 195, 195 | 195, 195 | |
| FH3203 | Microsatellite | 8.623136 | 89, 89 | 89, 89 | |
| CAMC11.010 | Microsatellite | 11.425726 | 307, 307 | 307, 307 | |
| FH4031 | Microsatellite | 14.237434 | 312, 331 | 312, 331 | LOH |
| REN286P10 | Microsatellite | 17.844923 | 182, 185 | 182, 185 | |
| REN242K04 | Microsatellite | 19.23201 | 328, 328 | 328, 328 | |
| CAMC11.022 | Microsatellite | 20.94395 | 164, 169 | 164, 169 | |
| CAMC11.021 | Microsatellite | 24.758282 | 242, 250 | 242, 250 | |
| REN142O09 | Microsatellite | 26.338024 | 256, 261 | 256, 261 | |
| CAMC11.020 | Microsatellite | 29.356331 | 332, 332 | 332, 332 | |
| CAMC11.001 | Microsatellite | 31.434645 | 264, 264 | 264, 264 | |
| FH2004 | Microsatellite | 32.161602 | 240, 240 | 240, 240 | |
| CAMC11.003 | Microsatellite | 33.777804 | 285, 285 | 285, 285 | |
| FH2710 | Microsatellite | 34.47053 | 187, 187 | 187, 187 | |
| CAMC11.004 | Microsatellite | 34.561666 | 247, 363 | 249, 249 | |
| FH2874 | Microsatellite | 35.143202 | 177, 177 | 177, 177 | |
| CAMC11.005 | Microsatellite | 35.801351 | 327, 327 | 327, 327 | |
| CAMC11.006 | Microsatellite | 36.813802 | 321, 325 | 321, 325 | |
| FH2319 | Microsatellite | 37.54361 | 304, 334 | 304, 334 | |
| FH2982 | Microsatellite | 41.069406 | 361, 379 | 361, 379 | |
| CAMC11.019 | Microsatellite | 41.843895 | 243, 243 | 243, 243 | |
| FH2706 | Microsatellite | 43.991845 | 201, 201 | 201, 201 | |
| CAMC11.026 | Microsatellite | 44.172674 | 224, 226 | 224, 226 | LOH |
| CDKN2A | Gene, exon 2 | 44.255474 | Present | Missing | |
| Contig_16328 | contig end | 44.258553 | |||
| Gap in dog sequence | 44.258554 | ||||
| CDKN2A | Gene, exon 1α | Undetermined | |||
| Gap in dog sequence | 44.260435 | ||||
| Contig_16329 | contig start | 44.260436 | |||
| CDKN2A | Gene, exon 1β | 44.280332 | Present | Present | |
| CAMC11.027 | Microsatellite | 44.288351 | 306, 306 | 306, 306 | |
| CDKN2B | Gene, exon 2 | 44.291018 | Present | Missing | |
| CDKN2B | Gene, exon 1 | 44.293951 | Heterozygous | Missing | |
| CAMC11.029 | Microsatellite | 44.304276 | 256, 262 | 256, 256 | LOH |
| CAMC11.017 | Microsatellite | 45.277711 | 207, 238 | 207, 238 | |
| C11.868 | Microsatellite | 48.547399 | 216, 216 | 216, 216 | |
| CAMC11.016 | Microsatellite | 50.214468 | 223, 223 | 223, 223 | |
| CAMC11.015 | Microsatellite | 52.827522 | 209, 213 | 209, 213 | |
| CAMC11.014 | Microsatellite | 55.676158 | 268, 268 | 268, 268 | |
| FH2019 | Microsatellite | 56.07231 | 211, 211 | 211, 211 | |
| FH3238 | Microsatellite | 57.734062 | 276, 276 | 276, 276 | |
| REN249L05 | Microsatellite | 58.631801 | 175, 175 | 175, 175 | |
| TGFBR1 | Gene | 59.220624 | |||
| CAMC11.024 | Microsatellite in TGFRB1 intron 7 | 59.239311 | 310, 310 | 310, 310 | |
| CAMC11.013 | Microsatellite | 59.911747 | 338, 346 | 338, 346 | |
| CAMC11.023 | Microsatellite | 61.260282 | 265, 277 | 265, 277 | |
| REN147O02 | Microsatellite | 61.367981 | 243, 243 | 243, 243 | |
| CAMC11.012 | Microsatellite | 63.816291 | 218, 222 | 218, 222 | |
| CAMC11.011 | Microsatellite | 67.610944 | 212, 212 | 212, 212 | |
| C11.873 | Microsatellite | 67.767854 | 136, 144 | 136, 144 | |
| FH3065 | Microsatellite | 72.608147 | 185, 185 | 185, 185 | |
| DGN13 | Microsatellite | 72.807881 | 303, 326 | 303, 326 | |
*Microsatellites are listed according to their position in Ensembl's CanFam 2.0 (July 2008). The position of exons within the CDKN2B-CDKN2A gene cluster is provided, along with the position of the gap between contigs 16328 and 16329, and the location of TGFBR1. §The numbers in the genotype columns correspond to the PCR product sizes (in base pairs) of the alleles, as determined by the sequencing instrument.