Table 4.
Project Identification No. | Total | ||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | ||
No. of subjects | 1,080 | 930 | 1,830 | 2,489 | 1,628 | 1,776 | 2,907 | 1,400 | 14,040 |
No. of SNPs per subject | 98–115 | 37–46 | 15–19 | 13–17 | 15 | 9–18 | 34–44 | 1–9 | 283 |
No. of genotypes | 258,517 | 79,646 | 36,480 | 41,999 | 36,483 | 41,216 | 130,383 | 21,834 | 646,558 |
No. of measured person-SNPsa | 114,464 | 37,695 | 33,590 | 40,085 | 24,426 | 25,794 | 112,003 | 10,917 | 398,974 |
No. of all doubles (% of person-SNPs) | 90,162 (78.77) | 17,732 (47.04) | 2,787 (8.30) | 1,914 (4.77) | 5,696 (23.32) | 14,260 (55.28) | 16,986 (15.17) | 10,917 (100) | 160,454 (40.22) |
No. of SNPs with routine doublesb | 111 | 37 | 19 | 17 | 14 | 18 | 37 | 9 | 262 |
No. of routine doubles (% of person-SNPs) | 33,262 (29.06) | 4,347 (11.53) | 2,787 (8.30) | 1,914 (4.77) | 2,960 (12.12) | 590 (2.29) | 13,762 (12.29) | 10,917 (100) | 70,539 (17.68) |
No. of routine doubles (% of person-SNPs) without missing genotypes and with 3 genotype values present | 26,832 (23.44) | 3,199 (8.49) | 2,664 (7.93) | 1,188 (2.96) | 1,980 (8.11) | 241 (0.93) | 11,957 (10.68) | 9,744 (89.26) | 57,805 (14.49) |
Abbreviation: SNP, single nucleotide polymorphism.
“Person-SNPs” = product of the number of persons and the number of SNPs.
“Doubles” = double genotypes (i.e., pairs of 2 genotype measurements on the same subject and the same SNP).