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. 2008 Sep 12;168(8):878–889. doi: 10.1093/aje/kwn208

Table 4.

Summary of Collected Data from 8 Projects and 646,558 Genotypes Assessed in 2005

Project Identification No. Total
1 2 3 4 5 6 7 8
No. of subjects 1,080 930 1,830 2,489 1,628 1,776 2,907 1,400 14,040
No. of SNPs per subject 98–115 37–46 15–19 13–17 15 9–18 34–44 1–9 283
No. of genotypes 258,517 79,646 36,480 41,999 36,483 41,216 130,383 21,834 646,558
No. of measured person-SNPsa 114,464 37,695 33,590 40,085 24,426 25,794 112,003 10,917 398,974
No. of all doubles (% of person-SNPs) 90,162 (78.77) 17,732 (47.04) 2,787 (8.30) 1,914 (4.77) 5,696 (23.32) 14,260 (55.28) 16,986 (15.17) 10,917 (100) 160,454 (40.22)
No. of SNPs with routine doublesb 111 37 19 17 14 18 37 9 262
No. of routine doubles (% of person-SNPs) 33,262 (29.06) 4,347 (11.53) 2,787 (8.30) 1,914 (4.77) 2,960 (12.12) 590 (2.29) 13,762 (12.29) 10,917 (100) 70,539 (17.68)
No. of routine doubles (% of person-SNPs) without missing genotypes and with 3 genotype values present 26,832 (23.44) 3,199 (8.49) 2,664 (7.93) 1,188 (2.96) 1,980 (8.11) 241 (0.93) 11,957 (10.68) 9,744 (89.26) 57,805 (14.49)

Abbreviation: SNP, single nucleotide polymorphism.

a

“Person-SNPs” = product of the number of persons and the number of SNPs.

b

“Doubles” = double genotypes (i.e., pairs of 2 genotype measurements on the same subject and the same SNP).