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. 2009 Sep 1;4(9):e6855. doi: 10.1371/journal.pone.0006855

Table 1. A recipe-book for constructing Hamiltonians from transition rates.

Transition Contribution to H
One-body terms diffusion of a, rate κ Inline graphic
death of a, rate μ Inline graphic
change (bc), rate ν Inline graphic
Two-body terms competition, kernel V Inline graphic
infection,(ab) Inline graphic
birth, dispersal kernel V Inline graphic

One-body terms are integrated over x and two-body terms are integrated over both x and y. The positive terms correspond to the efflux of probability from a configuration state, and the negative terms effect the flow of probability into a new state.