. Author manuscript; available in PMC: 2010 Aug 6.

Published in final edited form as: DNA Repair (Amst). 2009 Jul 8;8(8):961–968. doi: 10.1016/j.dnarep.2009.06.002

Table I.

DNA oligonucleotides used in this study.

Name	Sequence (5′→3′)^a
dual_0	TCG CCA GGG CTT TCC (AF-T)AG TCA CGA CCG TAA AAC GAC GGC CA-Q
DUAL	AF-TAG GAG GGC TTT CCT CCT CAC GAC CGT CAA ACG ACG GTC A-Q
UD	TAG GAG GGC TTT CCT CCT CAC GAC CGT CAA ACG ACG GTC A
*U	AF-TAG GAG GGC TTT CCT CCT CAC GAC C
D°	GTC AAA CGA CGG TCA-Q
T	CTG ACC GTC GTT TGA CGG TCG TGA GGA GGA AAG CCC TCC TA
UT	CTG ACC GTC GTT TGA CGG TCG
DT	TGA GGA GGA AAG CCC TCC TA

“AF” and “Q” indicate the positions of the Alexa Fluor 488 and Black Hole Quencher-1 moieties, respectively, linked to the 5′- or 3′-termini of applicable DNA substrates. For probe dual_0, the Alexa Fluor 488 dye was conjugated to an internal T residue.