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. 2009 Apr 3;294(2):216–224. doi: 10.1111/j.1574-6968.2009.01568.x

Table 2.

Differential regulated proteins in H44/76Δhfq

Gene ID* Name† Location‡ Reg−§ Functions Functional class∥ MW** pI†† Figure‡‡
NMB0018 PilE CE − Type IV pilus assembly protein PilE Surface structure 18 072 9.6176 4c
NMB0138 FusA W + Elongation factor G Protein translation and modification 77 244 4.8184 4a
NMB0142 RplC W + 50S ribosomal protein L3 Ribosomal protein synthesis and modification 22 678 10.7606 4a
NMB0154 RplE W − 50S ribosomal protein L5 Ribosomal protein synthesis and modification 20 322 10.0609 4a
NMB0341 TspA§§ C + T-cell-stimulating protein A Unknown 92 488 4.0561 NS
NMB0430 PrpB W, C + Putative carboxyphosphonoenol pyruvate phosphonomutase Carbohydrate metabolism 31 714 5.0352 4a
NMB0431 PrpC C + Methylcitrate synthase Carbohydrate metabolism 42 818 7.1147 NS
NMB0546 AdhP W + Alcohol dehydrogenase (propanol preferring) Fermentation 36 547 5.8432 4b
NMB0554¶¶ DnaK W + Molecular chaperone Environmental information processing 68 791 4.5862 4a
NMB0589 RplS CE + 50S ribosomal protein L19 Ribosomal protein synthesis and modification 13 767 11.0643 NS
NMB0634¶¶ FbpA C + Iron(III) ABC transporter/major ferric iron-binding protein Transport/binding proteins 35 827 10.1574 NS
NMB0791¶¶ PpiB W + Peptidyl-prolyl cis–trans isomerase B (cyclophilin B) Protein translation and modification 18 852 4.8602 4b
NMB0823 Adk W + Adenylate kinase Purine ribonucleotide biosynthesis 23 190 4.7879 4b
NMB0884¶¶ SodB W, C + Superoxide dismutase, Fe–Mn family Detoxification 21 892 6.1483 4b
NMB0920 icd W, W, SP + Isocitrate dehydrogenase Tricarboxylic acid cycle 80 163 5.6646 4a, 4b
NMB0946 – W, OM + Peroxiredoxin 2 family protein Unknown 26 912 4.5382 4b
NMB0954 GltA W, C + Type II citrate synthase Tricarboxylic acid cycle 48 121 6.7886 4a
NMB1320¶¶ RplI W + 50S ribosomal protein L9 Ribosomal protein synthesis and modification 15 747 7.5349 4b
NMB1388 Pgi-2 C + Glucose-6-phosphate isomerase Glycolysis 62 084 6.5126 NS
NMB1398 SodC W + Cu–Zn superoxide dismutase Detoxification, periplasmic protein 19 520 6.6244 4b
NMB1572¶¶ AcnB W, IM + Aconitate hydratase Tricarboxylic acid cycle 92 715 5.2810 4a
NMB1584 – W, C, C + 3-Hydroxyacid dehydrogenase Amino acid metabolism 30 378 5.1348 4b
NMB1710 GdhA W − Glutamate dehydrogenase Amino acid biosynthesis 48 490 6.1895 4b
NMB1796¶¶ – W, C + Putative oxidoreductase Metabolism 20 686 5.8148 4b
NMB1934 AtpD IM − ATP synthase F1, β chain ATP-proton motive force 50 391 4.7746 NS
NMB1936 AtpA IM − ATP synthase F1, α chain ATP-proton motive force 55 291 5.2754 NS
NMB2091 – CE + Putative hemolysin Membranes, lipoproteins and porins 21 745 10.2186 4c
NMB2129 ArgG IM + Argininosuccinate synthase Amino acid biosynthesis 49 664 4.9527 NS
*

Gene identification according to Tettelin et al. (2000).

†

Protein name according to Tettelin et al. (2000).

‡

Fraction in which the protein was identified: W, whole cell lysate; C, cytoplasm; CE, cell envelop; IM, innermembrane; OM, outermembrane; SP, secreted protein fraction.

§

Up- or downregulation in hfq knockout.

Protein function according to KEGG (http://www.genome.jp/kegg).

∥

Functional classification according to Parkhill et al. (2000).

**

Protein molecular weight according to JCVI-CMR (http://cmr.jcvi.org/cgi-bin/CMR/shared/Menu.cgi?menu=genome).

††

Isoelectric point according to JCVI-CMR (http://cmr.jcvi.org/cgi-bin/CMR/shared/Menu.cgi?menu=genome).

‡‡

Figure in which spot and/or band is identified. NS, not shown.

§§

Protein name according to Oldfield et al. (2007).