Table 2.

Contrasting results between the two candidate genes/association analyses.

Locus	Gene	SNP	CLP Data (p-value)	CLP + Dental Anomalies Data (p-value)
Loci where association is present in both clefts and clefts + dental anomalies data
9q22.33	ANKS6	rs4742741	0.001	0.0004
	CYLC2	rs843258	0.02	0.008
	GABRB2	rs1930135	0.01	0.009
	TGFBR1	rs418919	0.005	0.02
	FOXE1	rs1020884	0.01	0.01
	FOXE1	rs4743088	0.01	0.01
17q21.1	ERBB2	rs1810132	0.0006	0.0006
	ITGB3	rs2015729	0.002	0.003
	ITGB3	rs2292699	0.01	0.005
1q32.3-q41	IRF6	rs2013162	0.002	0.002
	IRF6	rs674433	0.001	0.01
6q21-q23	SCML4	rs9320231	0.01	0.006
	BC039503	rs6921044	0.01	0.006
	TCF21	rs969282	0.02	0.008
	LAMA4	rs971402	0.003	0.008
	MTRFL1	rs2503791	0.003	0.009
	TAAR6	rs7772821	0.005	0.01
2p13	TGFA	rs377122	0.04	0.03
Loci where association is stronger in the clefts + dental anomalies than that in the clefts data
5q34	FGF18	rs4559013	0.09	0.05
	FGF18	rs3934591	0.1	0.05
14q24.3-q31.1	DPF3	rs2536143	0.18	0.03
	NRXN3	rs221430	0.32	0.04
15q11.2-q12	SLC12A5	rs2879515	0.06	0.01
	GABRB3	rs878960	0.06	0.02
	GABRB3	rs1426223	0.06	0.05
	LIPC	rs690	0.02	0.04
20q13	AHCY	rs819133	0.06	0.02
	BMP7	rs6123674	0.07	0.04
21q22.11	GART	rs4817579	0.16	0.02