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. 2007 Jun 8;100(1):129–140. doi: 10.1093/aob/mcm092

Table 5.

Other genes potentially related to plant–pathogen interaction present in the RT and SP libraries

Class* Functional annotation Species e-value Size (bp)
I Arabinogalactan protein Gossypium hirsutum 1·10−40 306
I Cellulose synthase Gossypium hirsutum 1·10−81 496
I Chitinase Theobroma cacao 4·10−71 382
I Expansin Populus tremula × Populus tremuloides 2·10−70 412
I Extensin Populus nigra 2·10−37 718
I Hydroxyproline-rich glycoprotein Arabidopsis thaliana 9·10−36 492
I O-methyltransferase Fragaria × ananassa 1·10−60 496
I Pectate lyase Fragaria × ananassa 7·10−47 281
I Pectin methylesterase Silene latifolia 9·10−50 407
I Polygalacturonase Arabidopsis thaliana 6·10−46 413
II Adhesin Arabidopsis thaliana 2·10−17 341
II Hydrophobin Coprinopsis cinerea 8·10−24 467
II Kinesin Arabidopsis thaliana 6·10−71 499
II Myosin heavy chain Oryza sativa 1·10−7 421
III ABC transporter Arabidopsis thaliana 3·10−43 420
III Fibre sucrose transporter Gossypium barbadense 6·10−58 446
III Multidrug transporter protein Arabidopsis thaliana 9·10−35 414
IV Rab gene Arabidopsis thaliana 2·10−57 378
V 12-Oxophytodienoate reductase Catharanthus roseus 1·10−65 504
V Acyl-coA synthetase Cicer arietinum 4·10−20 378
V Asparagine synthetase Triphysaria versicolor 9·10−89 498
V ATP citrate-lyase Arabidopsis thaliana 3·10−45 607
V Carbonic anhydrase Gossypium hirsutum 6·10−11 162
V Germin oxalate oxidase Gossypium raimondii 3·10−50 491
V Glutamine synthetase Oryza sativa 5·10−43 527
V†,‡ Glyceraldehyde 3-phosphate dehydrogenase Oryza sativa 7·10−46 492
V Hydroxymethyltransferase Arabidopsis thaliana 3·10−37 248
V Lipase Arabidopsis thaliana 6·10−49 447
V Methionine sulfoxide reductase Arabidopsis thaliana 5·10−44 447
V Monodehydroascorbate reductase Lycopersicon esculentum 5·10−52 348
V NADH dehydrogenase Beta vulgaris 9·10−52 345
V NADPH oxidase Arabidopsis thaliana 7·10−29 265
V Ornithine decarboxylase Haemonchus contortus 7·10−16 327
V Polyketide synthase Oryza sativa 9·10−9 350
V S-Adenosyl-l-methionine synthetase Carica papaya 4·10−69 486
V Semialdehyde dehydrogenase Arabidopsis thaliana 3·10−65 434
V†,‡ Squalene monooxygenase Medicago truncatula 5·10−21 478
V Sulfite oxidase Arabidopsis thaliana 3·10−71 477
V Thioredoxin Ricinus communis 3·10−54 511
VI 1-Aminocyclopropane-1-carboxylic acid oxidase Gossypium barbadense 4·10−63 461
VI Betaine aldehyde dehydrogenase Oryza sativa 6·10−12 278
VI Caffeic acid 3-O-methyltransferase Prunus dulcis 2·10−46 522
VI Caffeine synthase Camellia sinensis 1·10−16 415
VI Chalcone synthase Hydrangea macrophylla 5·10−80 522
VI Cytochrome P450 Panax ginseng 3·10−62 471
VI Polyphenol oxidase Populus tremuloides 6·10−31 355
VII Acinus L protein Oryza sativa 2·10−13 442
VIII bZIP protein Glycine max 1·10−55 500
VIII EREBP/AP2-related transcription factor Mesembryanthemum crystallinum 2·10−18 390
VIII Glycine-rich RNA binding protein Pisum sativum 8·10−32 452
VIII Myb family transcription factor Arabidopsis thaliana 2·10−32 509
VIII WRKY transcription factor Arabidopsis thaliana 3·10−20 448
VIII Zinc finger protein family-like Arabidopsis thaliana 5·10−39 352
IX 26S proteasome Oryza sativa 2·10−73 518
IX Aspartic proteinase Theobroma cacao 9·10−72 407
IX Cyclophilin Arabidopsis thaliana 5·10−67 445
IX Cysteine protease Phaseolus vulgaris 8·10−79 553
IX F-box family protein Arabidopsis thaliana 2·10−44 516
IX Heat shock protein Euphorbia esula 1·10−68 407
IX Protease inhibitor Arabidopsis thaliana 7·10−39 470
IX Proteasome inhibitor Arabidopsis thaliana 2·10−41 465
IX Protein disulfide isomerase (PDI) Datisca glomerata 2·10−54 474
IX Serine carboxypeptidase family Arabidopsis thaliana 4·10−57 495
IX Ubiquitin family protein Arabidopsis thaliana 2·10−48 397
IX U-box domain-containing protein Arabidopsis thaliana 5·10−38 386
IX Vacuolar processing enzyme precursor (VPE) Citrus sinensis 1·10−57 526
X Calmodulin-binding family protein Arabidopsis thaliana 8·10−80 619
X GTP binding protein Lycopersicon esculentum 8·10−70 380
X MAP kinase Oryza sativa 0·001 466
X Phosphatase 2A Oryza sativa 1·10−48 355
X Protein kinase family protein Arabidopsis thaliana 3·10−63 376
X Receptor kinase Solanum tuberosum 2·10−53 360
XII†,‡ 14-3-3-like protein Populus × canescens 3·10−78 464
XII Beta-1,3-glucanase Arabidopsis thaliana 1·10−55 423
XII Cysteine-rich protein Homo sapiens 2·10−4 307
XII Glycine-rich protein Arabidopsis thaliana 3·10−17 319
XII Lipid transfer protein (LTP) Arabidopsis thaliana 2·10−27 493
XII Lipoxygenase Fragaria × ananassa 9·10−20 431
XII Peroxidase Gossypium hirsutum 2·10−57 501
XII.A Apoptosis inhibitor Arabidopsis thaliana 1·10−10 275
XII.A Ascorbate peroxidase Arabidopsis thaliana 6·10−4 191
XII.A Avr9/Cf-9 protein Nicotiana tabacum 4·10−12 412
XII.A Bax inhibitor Brassica napus 4·10−22 412
XII.A Disease resistance-responsive protein Arabidopsis thaliana 2·10−56 509
XII.A Glutathione peroxidase Hevea brasiliensis 7·10−45 524
XII.A Glutathione S-transferase Glycine max 2·10−88 715
XII.A HSR203J like protein Capsicum chinense 6·10−21 334
XII.A Lectin Cicer arietinum 7·10−16 457
XII.A Leucine-rich repeat family protein Arabidopsis thaliana 2·10−58 734
XII.A MLO-like protein 1 Arabidopsis thaliana 3·10−23 415
XII.A Pathogenesis-related protein 1 Vitis vinifera 4·10−43 474
XII.A SC0A Lycopersicon esculentum 7·10−8 236
XII.A Selenium-binding protein Medicago sativa 2·10−22 275
XII.A Snakin Solanum tuberosum 2·10−20 321
XII.A†,‡ Superoxide dismutase Fagus sylvatica 4·10−51 372
XII.B ABA-responsive family protein Arabidopsis thaliana 4·10−14 264
XII.B Auxin-responsive family protein Arabidopsis thaliana 2·10−26 486
XII.B Brassinosteroid signalling positive regulator Arabidopsis thaliana 1·10−13 250
XII.B Ethylene-responsive element binding protein Gossypium hirsutum 7·10−7 355
XII.B Jasmonic acid 2 Lycopersicon esculentum 8·10−16 427
XII.B Patatin Arabidopsis thaliana 5·10−22 485
XII.B Senescence-associated protein Arabidopsis thaliana 9·10−50 441
XII.B Syringolide-induced protein Glycine max 2·10−22 244
XII.B Thaumatin Vitis riparia 1·10−48 391

* The class numbers correspond to those described in Fig. 3 and in Journet et al. (2002).

Homologous to sequence from Jones et al. (2002).

Homologous to sequence from Verica et al. (2004).