Table 5.
Class* | Functional annotation | Species | e-value | Size (bp) |
---|---|---|---|---|
I | Arabinogalactan protein | Gossypium hirsutum | 1·10−40 | 306 |
I† | Cellulose synthase | Gossypium hirsutum | 1·10−81 | 496 |
I‡ | Chitinase | Theobroma cacao | 4·10−71 | 382 |
I | Expansin | Populus tremula × Populus tremuloides | 2·10−70 | 412 |
I† | Extensin | Populus nigra | 2·10−37 | 718 |
I | Hydroxyproline-rich glycoprotein | Arabidopsis thaliana | 9·10−36 | 492 |
I† | O-methyltransferase | Fragaria × ananassa | 1·10−60 | 496 |
I | Pectate lyase | Fragaria × ananassa | 7·10−47 | 281 |
I | Pectin methylesterase | Silene latifolia | 9·10−50 | 407 |
I | Polygalacturonase | Arabidopsis thaliana | 6·10−46 | 413 |
II | Adhesin | Arabidopsis thaliana | 2·10−17 | 341 |
II | Hydrophobin | Coprinopsis cinerea | 8·10−24 | 467 |
II | Kinesin | Arabidopsis thaliana | 6·10−71 | 499 |
II | Myosin heavy chain | Oryza sativa | 1·10−7 | 421 |
III | ABC transporter | Arabidopsis thaliana | 3·10−43 | 420 |
III | Fibre sucrose transporter | Gossypium barbadense | 6·10−58 | 446 |
III | Multidrug transporter protein | Arabidopsis thaliana | 9·10−35 | 414 |
IV | Rab gene | Arabidopsis thaliana | 2·10−57 | 378 |
V‡ | 12-Oxophytodienoate reductase | Catharanthus roseus | 1·10−65 | 504 |
V | Acyl-coA synthetase | Cicer arietinum | 4·10−20 | 378 |
V | Asparagine synthetase | Triphysaria versicolor | 9·10−89 | 498 |
V | ATP citrate-lyase | Arabidopsis thaliana | 3·10−45 | 607 |
V‡ | Carbonic anhydrase | Gossypium hirsutum | 6·10−11 | 162 |
V | Germin oxalate oxidase | Gossypium raimondii | 3·10−50 | 491 |
V† | Glutamine synthetase | Oryza sativa | 5·10−43 | 527 |
V†,‡ | Glyceraldehyde 3-phosphate dehydrogenase | Oryza sativa | 7·10−46 | 492 |
V‡ | Hydroxymethyltransferase | Arabidopsis thaliana | 3·10−37 | 248 |
V† | Lipase | Arabidopsis thaliana | 6·10−49 | 447 |
V | Methionine sulfoxide reductase | Arabidopsis thaliana | 5·10−44 | 447 |
V | Monodehydroascorbate reductase | Lycopersicon esculentum | 5·10−52 | 348 |
V | NADH dehydrogenase | Beta vulgaris | 9·10−52 | 345 |
V | NADPH oxidase | Arabidopsis thaliana | 7·10−29 | 265 |
V | Ornithine decarboxylase | Haemonchus contortus | 7·10−16 | 327 |
V | Polyketide synthase | Oryza sativa | 9·10−9 | 350 |
V† | S-Adenosyl-l-methionine synthetase | Carica papaya | 4·10−69 | 486 |
V‡ | Semialdehyde dehydrogenase | Arabidopsis thaliana | 3·10−65 | 434 |
V†,‡ | Squalene monooxygenase | Medicago truncatula | 5·10−21 | 478 |
V | Sulfite oxidase | Arabidopsis thaliana | 3·10−71 | 477 |
V† | Thioredoxin | Ricinus communis | 3·10−54 | 511 |
VI† | 1-Aminocyclopropane-1-carboxylic acid oxidase | Gossypium barbadense | 4·10−63 | 461 |
VI | Betaine aldehyde dehydrogenase | Oryza sativa | 6·10−12 | 278 |
VI | Caffeic acid 3-O-methyltransferase | Prunus dulcis | 2·10−46 | 522 |
VI | Caffeine synthase | Camellia sinensis | 1·10−16 | 415 |
VI | Chalcone synthase | Hydrangea macrophylla | 5·10−80 | 522 |
VI | Cytochrome P450 | Panax ginseng | 3·10−62 | 471 |
VI | Polyphenol oxidase | Populus tremuloides | 6·10−31 | 355 |
VII | Acinus L protein | Oryza sativa | 2·10−13 | 442 |
VIII | bZIP protein | Glycine max | 1·10−55 | 500 |
VIII | EREBP/AP2-related transcription factor | Mesembryanthemum crystallinum | 2·10−18 | 390 |
VIII | Glycine-rich RNA binding protein | Pisum sativum | 8·10−32 | 452 |
VIII | Myb family transcription factor | Arabidopsis thaliana | 2·10−32 | 509 |
VIII | WRKY transcription factor | Arabidopsis thaliana | 3·10−20 | 448 |
VIII† | Zinc finger protein family-like | Arabidopsis thaliana | 5·10−39 | 352 |
IX | 26S proteasome | Oryza sativa | 2·10−73 | 518 |
IX† | Aspartic proteinase | Theobroma cacao | 9·10−72 | 407 |
IX | Cyclophilin | Arabidopsis thaliana | 5·10−67 | 445 |
IX† | Cysteine protease | Phaseolus vulgaris | 8·10−79 | 553 |
IX | F-box family protein | Arabidopsis thaliana | 2·10−44 | 516 |
IX‡ | Heat shock protein | Euphorbia esula | 1·10−68 | 407 |
IX† | Protease inhibitor | Arabidopsis thaliana | 7·10−39 | 470 |
IX | Proteasome inhibitor | Arabidopsis thaliana | 2·10−41 | 465 |
IX† | Protein disulfide isomerase (PDI) | Datisca glomerata | 2·10−54 | 474 |
IX | Serine carboxypeptidase family | Arabidopsis thaliana | 4·10−57 | 495 |
IX | Ubiquitin family protein | Arabidopsis thaliana | 2·10−48 | 397 |
IX | U-box domain-containing protein | Arabidopsis thaliana | 5·10−38 | 386 |
IX‡ | Vacuolar processing enzyme precursor (VPE) | Citrus sinensis | 1·10−57 | 526 |
X† | Calmodulin-binding family protein | Arabidopsis thaliana | 8·10−80 | 619 |
X | GTP binding protein | Lycopersicon esculentum | 8·10−70 | 380 |
X | MAP kinase | Oryza sativa | 0·001 | 466 |
X | Phosphatase 2A | Oryza sativa | 1·10−48 | 355 |
X | Protein kinase family protein | Arabidopsis thaliana | 3·10−63 | 376 |
X | Receptor kinase | Solanum tuberosum | 2·10−53 | 360 |
XII†,‡ | 14-3-3-like protein | Populus × canescens | 3·10−78 | 464 |
XII | Beta-1,3-glucanase | Arabidopsis thaliana | 1·10−55 | 423 |
XII | Cysteine-rich protein | Homo sapiens | 2·10−4 | 307 |
XII | Glycine-rich protein | Arabidopsis thaliana | 3·10−17 | 319 |
XII | Lipid transfer protein (LTP) | Arabidopsis thaliana | 2·10−27 | 493 |
XII | Lipoxygenase | Fragaria × ananassa | 9·10−20 | 431 |
XII | Peroxidase | Gossypium hirsutum | 2·10−57 | 501 |
XII.A | Apoptosis inhibitor | Arabidopsis thaliana | 1·10−10 | 275 |
XII.A‡ | Ascorbate peroxidase | Arabidopsis thaliana | 6·10−4 | 191 |
XII.A‡ | Avr9/Cf-9 protein | Nicotiana tabacum | 4·10−12 | 412 |
XII.A | Bax inhibitor | Brassica napus | 4·10−22 | 412 |
XII.A | Disease resistance-responsive protein | Arabidopsis thaliana | 2·10−56 | 509 |
XII.A | Glutathione peroxidase | Hevea brasiliensis | 7·10−45 | 524 |
XII.A | Glutathione S-transferase | Glycine max | 2·10−88 | 715 |
XII.A | HSR203J like protein | Capsicum chinense | 6·10−21 | 334 |
XII.A | Lectin | Cicer arietinum | 7·10−16 | 457 |
XII.A‡ | Leucine-rich repeat family protein | Arabidopsis thaliana | 2·10−58 | 734 |
XII.A | MLO-like protein 1 | Arabidopsis thaliana | 3·10−23 | 415 |
XII.A | Pathogenesis-related protein 1 | Vitis vinifera | 4·10−43 | 474 |
XII.A | SC0A | Lycopersicon esculentum | 7·10−8 | 236 |
XII.A | Selenium-binding protein | Medicago sativa | 2·10−22 | 275 |
XII.A | Snakin | Solanum tuberosum | 2·10−20 | 321 |
XII.A†,‡ | Superoxide dismutase | Fagus sylvatica | 4·10−51 | 372 |
XII.B | ABA-responsive family protein | Arabidopsis thaliana | 4·10−14 | 264 |
XII.B | Auxin-responsive family protein | Arabidopsis thaliana | 2·10−26 | 486 |
XII.B | Brassinosteroid signalling positive regulator | Arabidopsis thaliana | 1·10−13 | 250 |
XII.B | Ethylene-responsive element binding protein | Gossypium hirsutum | 7·10−7 | 355 |
XII.B | Jasmonic acid 2 | Lycopersicon esculentum | 8·10−16 | 427 |
XII.B | Patatin | Arabidopsis thaliana | 5·10−22 | 485 |
XII.B | Senescence-associated protein | Arabidopsis thaliana | 9·10−50 | 441 |
XII.B | Syringolide-induced protein | Glycine max | 2·10−22 | 244 |
XII.B | Thaumatin | Vitis riparia | 1·10−48 | 391 |
* The class numbers correspond to those described in Fig. 3 and in Journet et al. (2002).
† Homologous to sequence from Jones et al. (2002).
‡ Homologous to sequence from Verica et al. (2004).