Table 2.
Overview of all contrasts included in the explorative meta-analysis.
| Contrast | Sample group 1
|
Sample group 2
|
Cluster | ||
|---|---|---|---|---|---|
| Genetic background | Treatment | Genetic background | Treatment | ||
| GSE1491_1 | WT Col-0 | IAA | WT Col-0 | non | IAA |
| GSE1491_2 | WT Col-0 | IAA inhibitor A | WT Col-0 | non | IAA |
| GSE1491_3 | WT Col-0 | IAA inhibitor B | WT Col-0 | non | IAA |
| GSE1491_4 | WT Col-0 | IAA/IAA inhibitor A | WT Col-0 | non | IAA |
| GSE1491_5 | WT Col-0 | IAA/IAA inhibitor B | WT Col-0 | non | IAA |
| GSE3959_1 | MU LEC2GR | 1h LEC2 induction | MU LEC2GR | non | other |
| GSE3959_2 | MU LEC2GR | 4h LEC2 induction | MU LEC2GR | non | other |
| GSE3959_3 | MU LEC2GR | 1h LEC2 induction | WT WS-0 | 4h LEC2 induction | other |
| GSE3959_4 | MU LEC2GR | 4h LEC2 induction | WT WS-0 | 4h LEC2 induction | other |
| GSE431_1 | pmr4-1 MU | non | pmr4-1 MU | powdery mildew | pathogen |
| GSE4662_1 | MU STA1 | non | WT | NA | other |
| GSE5465_2 | MU OETOP6B | non | WT | NA | other |
| GSE5520_1 | WT Col-0 | DC1318 Cor 10e6 | MU STA1 | non | pathogen |
| GSE5520_10 | WT Col-0 | EcTUV86-2 fliC 10e8 | WT Col-0 | non | pathogen |
| GSE5520_3 | WT Col-0 | DC3000 10e6 | WT Col-0 | non | pathogen |
| GSE5520_5 | WT Col-0 | DC1318 Cor 5×10e7 | WT Col-0 | non | pathogen |
| GSE5520_6 | WT Col-0 | DC3000 hrpA-fliC 10e8 | WT Col-0 | non | pathogen |
| GSE5520_7 | WT Col-0 | DC3000 hrpA 10e8 | WT Col-0 | non | pathogen |
| GSE5520_9 | WT Col-0 | EcO157H7 10e8 | WT Col-0 | non | pathogen |
| GSE5526_1 | WT? | non | WT? | non | other |
| GSE5759_1 | WT Col-0 | dark plus lincomycin | WT Col-0 | dark | other |
| GSE5759_2 | WT Col-0 | red light plus lincomycin | WT Col-0 | red light | other |
| GSE5770_1 | WT Col-0 | lincomycin | WT Col-0 | non | other |
| GSE5770_2 | MU abi4-102 | lincomycin | MU abi4-102 | non | other |
| GSE5770_3 | MU gun1-1 | lincomycin | MU gun1-1 | non | other |
| GSE630_1 | WT Col-0 | IAA (2h 5 μM) | WT Col-0 | EtOH (2h) | IAA |
| GSE630_10 | MU arf2-6 | IAA (2h 5 μM) | MU arf2-6 | EtOH (2h) | IAA |
| GSE630_17 | MU IAA17-6 | EtOH (2 h) | WT Col-0 I | EtOH (2h) | IAA |
| GSE630_18 | MU arx3-1 | EtOH (2 h) | WT Col-0 I | EtOH (2h) | IAA |
| GSE630_19 | MU i5i6i19 | EtOH (2 h) | WT Col-0 I | EtOH (2h) | IAA |
| GSE630_2 | MU nph4-1 | IAA (2h 5 μM) | MU nph4-1 | EtOH (2h) | IAA |
| GSE630_20 | MU IAA17-6 | IAA (2h 5 μM) | WT Col-0 I | IAA (2h 5μM) | IAA |
| GSE630_21 | MU arx3-1 | IAA (2h 5 μM) | WT Col-0 I | IAA (2h 5μM) | IAA |
| GSE630_22 | MU i5i6i19 | IAA (2h 5 μM) | WT Col-0 I | IAA (2h 5μM) | IAA |
| GSE630_24 | MU arf2-6 | IAA (2h 5 μM) | WT Col-0 A2 | IAA (2h 5μM) | IAA |
| GSE630_3 | MU arf19-1 | IAA (2h 5 μM) | MU arf19-1 | EtOH (2h) | IAA |
| GSE630_6 | MU IAA17-6 | IAA (2h 5 μM) | MU IAA17-6 | EtOH (2h) | IAA |
| GSE630_8 | MU i5i6i19 | IAA (2h 5 μM) | MU i5i6i19 | EtOH (2h) | IAA |
| GSE631_2 | MU arf2-6 | IAA (2h 5 μM) | MU arf2-6 | non | IAA |
| GSE631_4 | MU arf2-6 | IAA (2h 5 μM) | WT Col-0 | IAA (2h 5μM) | IAA |
| GSE911_4 | 35S::LFY | non | WT ler | 35S::LFY | other |
Each contrast consists of two groups which are described by their genetic background and treatment. The last column cluster derives from the clustering on the kernel PCA scores. Contrasts are labeled with the GEO series number followed by a contrast index.