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. 2009 Sep 11;5(9):e1000580. doi: 10.1371/journal.ppat.1000580

Figure 4. Compatibility matrix of parsimony informative SNPs.

Figure 4

The genome positions are numbered to the left of the matrix. Black squares indicate incompatible sites, where nucleotide changes are inferred to have occurred multiple times either due to recombination or repeated mutation. White squares represent compatible sites, at which all nucleotide changes can be inferred to have occurred only once in a phylogeny.