Table 2. Summary of next generation sequencing results.

Strain		NM20/02	NM31/04	Jp8756
Sequencing method		Roche 454 GS FLX	Illumina Solexa GA	Illumina Solexa GA
Total no. Reads		424,494	2,538,429	2,651,276
Averaged read length (nt)		213	35	35
Total sequences (nt)		90,299,836	88,845,015	92,794,660
Map to Agy99 chromosome	Total no. reads mapped (%)	382,116 (90.01)	2,343,269 (92.31)	2,279,741 (85.99)
	% genome mapped	93.72	99.99	94.47
	Average depth of mapped regions	14.5	14.1	13.6
Map to Agy99 plasmid pMUM001	Total no. reads mapped (%)	5,269 (1.24)	326,541 (12.86)	89,325 (3.37)
	% genome mapped	32.56	100	20.35
	Average depth of mapped regions	19.8	63.4	17.2