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. Author manuscript; available in PMC: 2009 Sep 2.
Published in final edited form as: J Infect Dis. 2008 Feb 15;197(4):597–607. doi: 10.1086/526519

Table 1.

RT and PCR primers.

Region Primer Set Sequence1
5'UTR Reverse (-) 184 - CGTCCTGGCAATTCCGGTGT - 165
Forward (+) 59 - TGTCTTCACGCAGAAAGCGTCTAGC - 83
E1 external Reverse (-) 1328 - CGTAGGGGACCAGTTCATCATCAT - 1305
Forward (+) 834 - GCAACAGGGAACCTTCCTGGTTGCTC - 859
E1 internal Reverse (-) 1316 - GTTCATCATCATATCCCATGCCAT - 1293
Forward (+) 843 - AACCTTCCTGGTTGCTCTTTCTCTAT - 868
GAPDH Reverse (-) 750 - TTCTAGACGGCAGGTCAGGT - 731
Forward (+) 542 - TCACTGCCACCCAGAAGACT - 561
1

HCV numbers relative to H77 (GenBank Accesion # NC_004102) GAPDH numbers relative to coding sequence of human glyceraldehyde-3-phosphate dehydrogenase (GenBank Accesion # BC083511)