Table 1.
Genes evaluated by the Oligo GEArray Human Extracellular Matrix and Adhesion Molecules Microarray
| Extracellular Matrix Proteins |
|---|
| Basement Membrane Constituents Collagen, type IV, alpha 2 |
| Collagen, type IV, alpha 3 |
| Collagen, type IV, alpha 6 |
| Collagen, type VII, alpha 1 |
| Collagen, type VIII, alpha 2 |
| Laminin, alpha 1 |
| Laminin, alpha 2 |
| Laminin, alpha 3 |
| Laminin, alpha 4 |
| Laminin, alpha 5 |
| Laminin, beta 1 |
| Laminin, beta 2 |
| Laminin, beta 3 |
| Laminin, gamma 1 (formerly LAMB2) |
| Secreted protein, acidic, cysteine-rich (osteonectin) |
| Collagens and ECM Structural |
| Constituents Collagen, type XI, alpha 1 |
| Collagen, type XI, alpha 2 |
| Collagen, type XII, alpha 1 |
| Collagen, type XIV, alpha 1 |
| Collagen, type XV, alpha 1 |
| Collagen, type XVI, alpha 1 |
| Collagen, type XIII, alpha 1 |
| Collagen, type XIX, alpha 1 |
| Collagen, type I, alpha 1 |
| Collagen, type XXIV, alpha 1 |
| Collagen, type XXVII, alpha 1 |
| Collagen, type IV, alpha 2 |
| Collagen, type IV, alpha 3 |
| Collagen, type IV, alpha 6 |
| Collagen, type V, alpha 1 |
| Collagen, type V, alpha 3 |
| Collagen, type VI, alpha 1 |
| Collagen, type VI, alpha 2 |
| Collagen, type VI, alpha 3 |
| Collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive) |
| Collagens and ECM Structural |
| Constituents |
| Collagen, type VIII, alpha 1 |
| Collagen, type VIII, alpha 2 |
| Collagen, type IX, alpha 1 |
| Fibronectin 1 |
| Kallmann syndrome 1 sequence |
| Laminin, alpha 4 |
| ECM Proteases ADAM metallopeptidase with thrombospondin type 1 motif, 1 |
| ADAM metallopeptidase with thrombospondin type 1 motif, 13 |
| ADAM metallopeptidase with thrombospondin type 1 motif, 8 |
| Matrix metallopeptidase 1 (interstitial collagenase) |
| Matrix metallopeptidase 10 (stromelysin 2) |
| Matrix metallopeptidase 11 (stromelysin 3) |
| Matrix metallopeptidase 12 (macrophage elastase) |
| Matrix metallopeptidase 13 (collagenase 3) |
| Matrix metallopeptidase 14 (membrane-inserted) |
| Matrix metallopeptidase 15 (membrane-inserted) |
| Matrix metallopeptidase 16 (membrane-inserted) |
| Matrix metallopeptidase 17 (membrane-inserted) |
| Matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) |
| Matrix metallopeptidase 20 (enamelysin) |
| Matrix metallopeptidase 3 (stromelysin 1, progelatinase) |
| Matrix metallopeptidase 7 (matrilysin, uterine) |
| ECM Proteases Matrix metallopeptidase 8 (neutrophil collagenase) |
| Matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) |
| Matrix metallopeptidase 24 (membrane-inserted) |
| Matrix metallopeptidase 26 |
| Spastic paraplegia 7 (pure and complicated autosomal recessive) |
| TIMP metallopeptidase inhibitor 1 |
| ECM Protease Inhibitors Collagen, type IV, alpha 3 |
| Collagen, type VI, alpha 3 |
| Collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive) |
| Kallmann syndrome 1 sequence |
| Sparc/ Osteonectin, cwcv and kazal-like domains proteoglycan |
| Thrombospondin 1 |
| TIMP metallopeptidase inhibitor 1 |
| TIMP metallopeptidase inhibitor 2 |
| TIMP metallopeptidase inhibitor 3 |
| Other ECM Molecules Chondroitin sulphate proteoglycan 2 (versican) |
| Connective tissue growth factor |
| Extracellular matrix protein 1 |
| Hyaluronan synthase 1 |
| Secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) |
| Transforming growth factor, beta-induced, 68kDa |
| Thrombospondin 2 |
| Thrombospondin 3 |
| Thrombospondin 4 |
| Laminin, beta 4 |
| Tetranectin (plasminogen binding protein) |
| Tenascin C (hexabrachion) |
| Vitronectin |
| Cell Adhesion Molecules |
| Transmembrane Molecules Cadherin 1, type 1, E-cadherin (epithelial) |
| CD44 molecule |
| Hyaluronan synthase 1 |
| Intercellular adhesion molecule 1 (CD54), human rhinovirus receptor |
| Integrin, alpha 1 |
| Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) |
| Integrin, alpha 2b |
| Integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) |
| Integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) |
| Integrin, alpha 5 (fibronectin receptor, alpha polypeptide) |
| Integrin, alpha 6 |
| Integrin, alpha 7 |
| Integrin, alpha 8 |
| Integrin, alpha L |
| Integrin, alpha M |
| Integrin, alpha V |
| Integrin, beta 1 |
| Integrin, beta 2 |
| Integrin, beta 3 |
| Integrin, beta 4 |
| Integrin, beta 5 |
| Integrin, beta 6 |
| Integrin, beta 7 |
| Integrin, beta 8 |
| Matrix metallopeptidase 14 (membrane-inserted) |
| Matrix metallopeptidase 15 (membrane-inserted) |
| Matrix metallopeptidase 16 (membrane-inserted) |
| Matrix metallopeptidase 17 (membrane-inserted) |
| Matrix metallopeptidase 24 (membrane-inserted) |
| Neural cell adhesion molecule 1 |
| Platelet/endothelial cell adhesion molecule (CD31 antigen) |
| Transmembrane Molecules Selectin E (endothelial adhesion molecule 1) |
| Selectin L (lymphocyte adhesion molecule 1) |
| Selectin P (granule membrane protein 140kDa, antigen CD62) |
| Sarcoglycan, epsilon |
| Spastic paraplegia 7 (pure and complicated autosomal recessive) |
| Vascular cell adhesion molecule 1 |
| Cell-Cell Adhesion CD44 molecule |
| Cadherin 1, type 1, E-cadherin (epithelial) |
| Collagen, type XI, alpha 1 |
| Collagen, type VI, alpha 2 |
| Collagen, type VIII, alpha 2 |
| Collagen, type XIX, alpha 1 |
| Catenin (cadherin-associated protein), delta 1 |
| Integrin, alpha 8 |
| Intercellular adhesion molecule 1 (CD54), human rhinovirus receptor |
| Vascular cell adhesion molecule 1 |
| Cell-Matrix Adhesion ADAM metallopeptidase with thrombospondin type 1 motif, 13 |
| CD44 molecule |
| Integrin, alpha 1 |
| Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) |
| Integrin, alpha 2b |
| Integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) |
| Integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) |
| Integrin, alpha 5 (fibronectin receptor, alpha polypeptide) |
| Integrin, alpha 6 |
| Integrin, alpha 7 |
| Integrin, alpha 8 |
| Integrin, alpha 9 |
| Integrin, alpha 10 |
| Integrin, alpha 11 |
| Cell-Matrix Adhesion Integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) |
| Integrin, alpha M (complement component 3 receptor 3 subunit) |
| Integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) |
| Integrin, alpha X |
| Integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) |
| Integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) |
| Integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) |
| Integrin, beta 4 |
| Integrin, beta 5 |
| Integrin, beta 6 |
| Integrin, beta 7 |
| Integrin, beta 8 |
| Sarcoglycan, epsilon |
| Secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) |
| Thrombospondin 3 |
| Other Adhesion Molecules Contactin 1 |
| Collagen, type XI, alpha 2 |
| Collagen, type XII, alpha 1 |
| Collagen, type XV, alpha 1 |
| Collagen, type XVI, alpha 1 |
| Collagen, type XVIII, alpha 1 |
| Collagen, type XXIV, alpha 1 |
| Collagen, type XXVII, alpha 1 |
| Collagen, type IV, alpha 3 |
| Collagen, type IV, alpha 6 |
| Collagen, type V, alpha 1 |
| Collagen, type V, alpha 3 |
| Collagen, type VI, alpha 1 |
| Collagen, type VI, alpha 3 |
| Collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive) |
| Other Adhesion Molecules Collagen, type VIII, alpha 1 |
| Collagen, type IX, alpha 1 |
| Chondroitin sulphate proteoglycan 2 (versican) |
| Connective tissue growth factor |
| Catenin (cadherin-associated protein), alpha 1 |
| Catenin (cadherin-associated protein), beta 1 |
| Catenin (cadherin-associated protein), delta 2 |
| Fibronectin 1 |
| Kallmann syndrome 1 sequence |
| Laminin, alpha 1 |
| Laminin, alpha 2 |
| Laminin, alpha 3 |
| Laminin, alpha 4 |
| Laminin, alpha 5 |
| Laminin, beta 1 |
| Laminin, beta 2 |
| Laminin, beta 3 |
| Laminin, gamma 1 (formerly LAMB2) |
| Sparc/ Osteonectin, cwcv and kazal-like domains proteoglycan |
| Thrombospondin 1 |
| Thrombospondin 2 |
| Thrombospondin 4 |
| Tetranectin (plasminogen binding protein) |
| Tenascin C (hexabrachion) |
| Vitronectin |