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. 2009 Jul 8;47(9):2818–2825. doi: 10.1128/JCM.00645-09

TABLE 3.

Characterization of the 15 microsatellite markers developed for population analysis of Viannia speciesa

Marker Species No. of isolates Repeat array Fragment size (bp) A He Ho FIS
CSg46 L. braziliensis 31 (AC) 10-20 79-99 9 0.783 0.419 0.468
L. guyanensis 20 (AC) 10-16 79-91 5 0.719 0.400 0.450
CSg47 L. braziliensis 31 (TG) 7-31 85-133 14 0.887 0.710 0.203
L. guyanensis 20 (TG) 3-16 77-103 11 0.893 0.700 0.221
CSg48 L. braziliensis 31 (TG) 4-8 70-78 4 0.524 0.167 0.685
L. guyanensis 20 (TG) 5-9 72-80 4 0.568 0.150 0.741
CSg53 L. braziliensis 31 (AC) 7-15 84-100 5 0.668 0.387 0.425
L. guyanensis 20 (AC) 7-15 84-100 4 0.706 0.250 0.652
CSg55 L. braziliensis 31 (TG) 11,15 93-101 2 0.151 0.097 0.362
L. guyanensis 20 (TG) 11-24 93-119 12 0.876 0.600 0.320
CSg59 L. braziliensis 31 (TC) 6-9 94-100 4 0.591 0.548 0.073
L. guyanensis 20 (TC) 6-8 94-98 3 0.656 0 1.000
7GN L. braziliensis 31 (AC) 7-19 92-116 10 0.736 0.387 0.478
L. guyanensis 20 (AC) 5-10 88-98 5 0.786 0.150 0.813
11H L. braziliensis 31 (GT) 7-12 86-96 6 0.637 0.323 0.498
L. guyanensis 20 (GT) 7-15 86-102 8 0.788 0.250 0.688
11C L. braziliensis 31 (TG) 5-11 90-102 7 0.742 0.645 0.133
L. guyanensis 20 (TG) 6-8 92-96 3 0.376 0.250 0.340
6F L. braziliensis 31 (AC) 10-22 89-113 8 0.779 0.613 0.216
L. guyanensis 20 (AC) 6-16 81-101 8 0.824 0.250 0.702
10F L. braziliensis 31 (CA) 12-21 91-109 8 0.818 0.581 0.294
L. guyanensis 20 (CA) 12-21 91-109 2 0.296 0.150 0.500
B6F L. braziliensis 31 (AC) 6-20 79-107 12 0.904 0.800 0.117
L. guyanensis 20 (AC) 8-11 83-89 4 0.744 0.350 0.536
B3H L. braziliensis 31 (AC) 5-19 61-89 11 0.877 0.710 0.194
L. guyanensis 20 (AC) 7-12 65-75 5 0.681 0.450 0.345
AC01R L. braziliensis 31 (CA) 7-11 97-105 4 0.290 0.258 0.111
L. guyanensis 20 (CA) 7-16 97-115 5 0.718 0.550 0.239
AC16R L. braziliensis 31 (TG) 8-24 83-115 9 0.721 0.484 0.333
L. guyanensis 20 (TG) 11-15 89-97 5 0.673 0.300 0.561
Mean All strainsb 57 11.0 0.786 0.401 0.492
L. braziliensis 31 7.5 0.674 0.475 0.298
L. guyanensis 20 5.6 0.687 0.320 0.541
a

A, number of alleles; He, expected heterozygosity; Ho, observed heterozygosity; FIS, inbreeding coefficient.

b

Including the two strains of L. peruviana and the single strains of L. shawi, L. naiffi, L. lainsoni, and L. panamensis.