TABLE 1.
NS2 mutation | Jc1 codon | H77 codon | Primer sequence (5′-3′)a |
---|---|---|---|
G10A | 823 | 819 | TCTGTGCATGGCCAGATAGCCGCGGCTCTGCTGGTAATG |
P24A | 837 | 833 | CACTCTCTTTACTCTCACCGCCGGGTATAAGACCCT |
K27A | 840 | 836 | CTCTCACCCCCGGGTATGCCACCCTCCTCGGCCAGTGT |
W35A | 848 | 844 | TCCTCGGCCAGTGTCTGGCCTGGTTGTGCTATCTCCTG |
W36A | 849 | 845 | TCCTCGGCCAGTGTCTGTGGGCCTTGTGCTATCTCCTG |
Y39A | 852 | 848 | TGTCTGTGGTGGTTGTGCGCCCTCCTGACCCTGGGGGAA |
E45A | 858 | 854 | TCTCCTGACCCTGGGGGCCGCCATGATTCAGGAGT |
E45K | 858 | 854 | TCTCCTGACCCTGGGGAAGGCCATGATTCAGGAGT |
P53A | 866 | 862 | TGATTCAGGAGTGGGTAGCCCCCATGCAGGTGCG |
R58A | 871 | 867 | TACCACCCATGCAGGTGGCCGGCGGCCGCGATGGCAT |
R61A | 874 | 870 | ATGCAGGTGCGCGGCGGCGCCGATGGCATCGCGTGG |
D62A | 875 | 871 | AGGTGCGCGGCGGCCGCGCCGGCATCGCGTGGGCCGT |
P73A | 886 | 882 | CCGTCACTATATTCTGCGCCGGTGTGGTGTTTGACATT |
F77A | 890 | 886 | TCTGCCCGGGTGTGGTGGCCGACATTACCAAATGGCTT |
D78A | 891 | 887 | TGCCCGGGTGTGGTGTTTGCCATTACCAAATGGCTTT |
D78K | 891 | 887 | TGCCCGGGTGTGGTGTTTAAGATTACCAAATGGCTTT |
K81A | 894 | 890 | TGGTGTTTGACATTACCGCCTGGCTTTTGGCGTTGCT |
K81E | 894 | 890 | TGGTGTTTGACATTACCGAATGGCTTTTGGCGTTGCT |
P89A | 902 | 898 | CTTTTGGCGTTGCTTGGGGCCGCTTACCTCTTAAGGGCCGCTT |
R111A | 924 | 920 | GAGCTCACGCTCTGATAGCCGTATGCGCTTTGGTGAA |
Y124A | 937 | 933 | AAGCAGCTCGCGGGGGGTAGGGCCGTTCAGGTGGCGCTATT |
R156A | 969 | 965 | ACTGGGCCGCTAGCGGCCTGGCCGACTTAGCGGTCGCCGT |
D157A | 970 | 966 | ACTGGGCCGCTAGCGGCCTGCGCGCCTTAGCGGTCGCCGT |
V160A | 973 | 969 | TGACACATGTGCCGTACGCCGTCAGAGCTCACGCTCTG |
S168A | 981 | 977 | TGGAACCCATCATCTTCGCCCCGATGGAGAAGAAGGT |
S168D | 981 | 977 | TGGAACCCATCATCTTCGACCCGATGGAGAAGAAGGT |
S168E | 981 | 977 | TGGAACCCATCATCTTCGAGCCGATGGAGAAGAAGGT |
E171A | 984 | 980 | TCATCTTCAGTCCGATGGCCAAGAAGGTCATCGTCTG |
K173A | 986 | 982 | TCAGTCCGATGGAGAAGGCCGTCATCGTCTGGGGAGC |
D180A | 993 | 989 | TCATCGTCTGGGGAGCGGCCACGGCTGCATGTGGGGA |
D181A | 994 | 990 | ATCGTCTGGGGAGCGGAGGCCGCTGCATGTGGGGACA |
R196A | 1009 | 1005 | ACTTCCCGTGTCCGCCGCCCTCGGCCAGGAGATCCTC |
Forward primers are shown; complementary reverse primers were also used in site-directed mutagenesis. Mutation sites are underlined.