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. 2009 Oct 2;5(10):e1000522. doi: 10.1371/journal.pcbi.1000522

Table 2. List of the membrane protein transporters.

Family PDB Chain Protein name Fraction of cavity residues (%) Fold-change (%)
IS* Random
MFS 2CFQ A Lactose permease 68.00 18.78 362.09.
K+ channel 1ORQ C KvAP voltage-gated K+ Channel 63.64 16.63 382.68
MFS 1PW4 A Glycerol-3-Phosphate Transporter 72.00 20.88 344.83
ABC transporter 3D31 C Sulfate/molybdate ABC transporter 75.00 25.48 294.35
MFS 2GFP A Multidrug drug transporter 61.90 24.80 249.60
K+ channel 2R9R B Kv1.2 voltage-gated K+ channel 46.15 15.61 295.67
Bacterial rhodopsin 1E12 A Chloride pump halorhodopsin 66.67 27.22 244.93
ATPase 3B8E A Na+/K+ ATPase 71.43 30.62 233.28
Bacterial rhodopsin 1H2S A Sensory rhodopsin 2 41.67 20.48 203.45
Bacterial rhodopsin 2EI4 A Archaerhodopsin 2 69.23 38.37 180.43
Bacterial rhodopsin 1C3W A Bacteriorhodopsin 31.25 20.79 150.31
GPCR 1L9H A Rhodopsin 44.44 30.57 145.39
ATPase 1WPG A P-type Ca2+ ATPase 54.55 36.64 148.88
ATPase 3B8C A Plasma membrane ATPase 76.19 57.94 131.50
Bacterial rhodopsin 1UAZ A Archaerhodopsin 1 31.25 24.38 128.18

*: The fraction of cavity residues was measured within the 90th percentile of IS.