Skip to main content
. Author manuscript; available in PMC: 2010 Sep 15.
Published in final edited form as: Biochemistry. 2009 Sep 15;48(36):8568–8577. doi: 10.1021/bi900563g

Table 3.

Calculated heme out-of-plane distortions from normal coordinate structural decomposition (NSD) analysis for the O2 complex of Tt H-NOX and other heme proteins.

PDB Protein Δoopa B2ub B1u A2u Eg(x) Eg(y) A1u Ref.
1U55 Tt WT A 1.59 −1.07 −1.11 −0.1 −0.10 0.24 −0.03 (14)
1U55 Tt WT B 1.11 −0.65 −0.79 0.32 −0.24 0.02 −0.03 (14)
1U4H Tt WT A 1.59 −1.09 −1.09 −0.02 −0.30 0.11 −0.06 (14)
1U4H Tt WT B 1.60 −1.00 −1.20 0.10 −0.15 0.14 −0.06 (14)
Heme A Tt I5L 1.28 −0.93 0.73 −0.11 −0.18 0.40 −0.02 c
Heme B Tt I5L 1.23 −0.81 −0.81 0.13 −0.31 0.14 −0.02 c
3EEE Tt P115A A 0.90 −0.40 −0.77 0.04 −0.17 0.02 0.00 (20)
3EEE Tt P115A B 0.82 −0.50 −0.61 0.03 −0.11 0.03 0.01 (20)
3EEE Tt P115A C 0.54 −0.04 −0.49 −0.09 −0.16 −0.08 0.01 (20)
3EEE Tt P115A D 0.62 0.07 −0.52 −0.03 −0.25 −0.18 0.01 (20)
Heme A Tt I5L/P115A 0.85 −0.53 0.05 −0.16 −0.05 0.52 −0.04 c
Heme B Tt I5L/P115A 0.74 −0.63 0.17 −0.02 0.01 0.32 −0.08 c
1DP6 Bj FixLd 0.60 0.44 −0.32 0.18 0.01 0.11 −0.03 (26)
1A6M Sw Mbe 0.36 0.19 0.01 0.22 −0.05 0.19 0.07 (28)
1ASH As Hbf 0.47 −0.11 0.41 0.08 −0.11 0.07 −0.01 (29)
1IDR tHb Ag 0.58 −0.13 0.33 0.28 −0.25 −0.19 0.04 (27)
1IDR tHb Bg 0.55 0.15 0.45 0.01 0.05 −0.21 −0.04 (27)
a

Total out-of-plane displacement (Å) from the complete basis set

b

Reported displacements for each symmetry type are from the minimal basis set

c

unpublished experiments, Olea et al.

d

O2-sensing FixL domain of Bradyrhizobium japonicum

e

Sperm whale myoglobin

f

Ascaris suum hemoglobin domain I

g

Truncated hemoglobin N from Mycobacterium tuberculosis