Table 1 Single‐nucleotide polymorphisms selected from within the MYH9 locus and their relative transmission disequilibrium test results.
n | dbSNP id | Genome position* | bp to next | Gene position | Alleles† | MAF‡ | T/NT§ | p Value¶ |
---|---|---|---|---|---|---|---|---|
1 | rs5995288 | chr22:35087134 | 16555 | Intron 1 | G/A | 0.36 | 91/88 | 0.82 |
2 | rs739097 | chr22:35070579 | 27221 | Intron 1 | T/C | 0.49 | 85/94 | 0.50 |
3 | rs2071731 | chr22:35043358 | 4199 | Intron 6 | C/T | 0.41 | 93/95 | 0.88 |
4 | rs1002246 | chr22:35039159 | 4476 | Intron 10 | C/T | 0.29 | 81/81 | 1.00 |
5 | rs3752462 | chr22:35034683 | 10877 | Intron 13 | G/A | 0.41 | 84/116 | 0.02 |
6 | rs2009930 | chr22:35023806 | 14952 | Intron 19 | T/C | 0.40 | 95/107 | 0.40 |
7 | rs2269529 | chr22:35008854 | 6440 | Exon 33 | A/G | 0.26 | 78/83 | 0.69 |
8 | rs7078 | chr22:35002414 | — | Exon.40‐3′UTR | T/C | 0.29 | 72/84 | 0.34 |
MAF, minor allele frequency; SNP, single‐nucleotide polymorphism; T/NT, transmission/non‐transmission; UTR, untranslated.
*UCSC Genome Browser on Human May 2004 Assembly.
†SNP alleles in coding frame, major allele first.
‡MAF calculated from all parental chromosomes.
§T/NT counts from heterozygous parents are given for the major allele.
¶p value for transmission disequilibrium test.