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. Author manuscript; available in PMC: 2009 Sep 10.
Published in final edited form as: Nat Protoc. 2008;3(9):1494–1500. doi: 10.1038/nport.2008.141

TABLE 1.

Troubleshooting table

Problem Possible reason Solution
Lack of biofilm formation (at the end of Step 11) Problems with counting the seeding inocula Make sure the dilutions and calculations are made appropriately
Some fungal isolates do not form biofilm These isolates should be considered “non-biofilm” formers
Establish “cut-off” values to identify non-biofilm forming isolates
Consider using some other surfaces/materials for biofilm formation
Biofilms visible by the naked eye but no orange color develops (at the end of step 21) Old XTT solution Prepare a fresh solution of XTT
Menadione not added Always remember to add menadione to the XTT before adding to the wells
Microbial contamination (at the end of step 11) Not maintaining sterility This is a rare occurrence.
Poor handling Always maintain proper microbiological handling techniques
Storage of reagents Minimize re-opening of reagents. Discard any reagent with signs of contamination
Biofilms peel-off from bottom of wells (all washing steps, but particularly after step 11) Aggressive washing Be gentle during washings (follow recommendations)
Most often this will be visible by the naked eye. Do not use these wells for final calculation
Make sure enough replicates are performed to minimize problems
Biofilms too old (mature) Disaggregation should be considered normal in the biofilm life cycle as biofilms reach maturity. Use younger biofilms