Table 1.
Nearby gene mapping of validated ChIP-cloned sequences.
Chr | Start | End | % DNA-b. | Strand | Dir. | Gene Name | Loc. |
1 | 212539607 | 212540208 | 40.79 | + | U | SMYD2 | I |
- | U | PTPN14 | E | ||||
1 | 184551050 | 184551638 | 46.99 | + | U | PRG4 | IDS |
+ | D | C1orf27 | E | ||||
- | U | TPR | I | ||||
1 | 148762360 | 148762960 | 17.71 | + | U | ECM1 | E |
+ | D | ADAMTSL4 | E | ||||
- | U | C1orf138 | E | ||||
- | D | APH1A | E | ||||
1 | 85509312 | 85509912 | 18.52 | + | U | WDR63 | E |
- | U | BCL10 | I | ||||
- | D | C1orf52 | E | ||||
1 | 172086277 | 172086887 | 3.81 | + | U | DARS2 | I |
+ | D | ZBTB37 | E | ||||
- | U | SERPINC1 | E | ||||
- | D | CENPL | E | ||||
1 | 210194877 | 210195427 | 35.81 | + | D | DTL | E |
- | U | INTS7 | I | ||||
- | D | LPGAT1 | E | ||||
2 | 38751513 | 38752103 | 47.52 | + | U | GALM | I |
+ | D | GEMIN6 | E | ||||
- | U | SFRS7 | E | ||||
- | D | HNRPLL | E | ||||
3 | 140069314 | 140069963 | 5.83 | + | U | FAIM | E |
- | U | FOXL2 | E | ||||
- | D | PIK3CB | E | ||||
4 | 77775984 | 77776232 | 18.02 | + | U | SHRM | I |
- | U | LOC345079 | E | ||||
- | D | E | |||||
12 | 12538539 | 12539089 | 13.72 | + | U | LOH12CR1 | E |
+ | D | CREBL2 | E | ||||
- | U | DUSP16 | I | ||||
- | D | MANSC1 | E | ||||
12 | 22082357 | 22083007 | 41.9 | + | D | CMAS | E |
- | U | ST8SIA1 | E | ||||
- | D | ABCC9 | E | ||||
12 | 88442012 | 88442661 | 26.03 | - | U | WDR51B | I |
- | D | DUSP6 | E | ||||
13 | 102554697 | 102555277 | 9.23 | + | U | ERCC5 | E |
- | D | SLC10A2 | E | ||||
13 | 73026115 | 73026665 | 34.44 | - | U | KLF12 | E |
14 | 68177078 | 68177617 | 35.78 | + | U | RAD51L1 | E |
- | U | ZFP36L1 | E | ||||
15 | 24494535 | 24495711 | 32.64 | + | D | GABRA5 | E |
- | U | GABRB3 | I | ||||
16 | 73675183 | 73675822 | 40.32 | + | U | ZNRF1 | I |
+ | D | ZFP1 | E | ||||
- | U | LDHD | E | ||||
- | D | WDR59 | E | ||||
16 | 16389501 | 16389952 | 43.06 | + | U | NOMO3 | E |
- | D | ABCC6 | E | ||||
19 | 19238022 | 19238623 | 13.61 | + | U | CSPG3 | E |
+ | D | KIAA0892 | E | ||||
- | U | TM6SF2 | E | ||||
- | D | HAPLN4 | E | ||||
X | 149544804 | 149545374 | 27.66 | + | U | MTM1 | I |
+ | D | MTMR1 | E | ||||
- | U | CD99L2 | E |
Randomly selected sequences (52) were validated by cold competition EMSAs as described in the Methods. Clones (24) with greater than 50% decrease in STAT5 DNA-binding to the [32P]-labeled probe were analyzed using CEAS. Fragments within 300 kb from coding sequences (20) are summarized above. (IDS: Immediate Downstream; U: Upstream; D: Downstream; I: Intron; E: Enhancer; chr: chromosome; dir: direction; % DNA-b.: % DNA-binding)