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. 2009 Aug 26;8:67. doi: 10.1186/1476-4598-8-67

Table 1.

Nearby gene mapping of validated ChIP-cloned sequences.

Chr Start End % DNA-b. Strand Dir. Gene Name Loc.
1 212539607 212540208 40.79 + U SMYD2 I
- U PTPN14 E

1 184551050 184551638 46.99 + U PRG4 IDS
+ D C1orf27 E
- U TPR I

1 148762360 148762960 17.71 + U ECM1 E
+ D ADAMTSL4 E
- U C1orf138 E
- D APH1A E

1 85509312 85509912 18.52 + U WDR63 E
- U BCL10 I
- D C1orf52 E

1 172086277 172086887 3.81 + U DARS2 I
+ D ZBTB37 E
- U SERPINC1 E
- D CENPL E

1 210194877 210195427 35.81 + D DTL E
- U INTS7 I
- D LPGAT1 E

2 38751513 38752103 47.52 + U GALM I
+ D GEMIN6 E
- U SFRS7 E
- D HNRPLL E

3 140069314 140069963 5.83 + U FAIM E
- U FOXL2 E
- D PIK3CB E

4 77775984 77776232 18.02 + U SHRM I
- U LOC345079 E
- D E

12 12538539 12539089 13.72 + U LOH12CR1 E
+ D CREBL2 E
- U DUSP16 I
- D MANSC1 E

12 22082357 22083007 41.9 + D CMAS E
- U ST8SIA1 E
- D ABCC9 E

12 88442012 88442661 26.03 - U WDR51B I
- D DUSP6 E

13 102554697 102555277 9.23 + U ERCC5 E
- D SLC10A2 E

13 73026115 73026665 34.44 - U KLF12 E

14 68177078 68177617 35.78 + U RAD51L1 E
- U ZFP36L1 E

15 24494535 24495711 32.64 + D GABRA5 E
- U GABRB3 I

16 73675183 73675822 40.32 + U ZNRF1 I
+ D ZFP1 E
- U LDHD E
- D WDR59 E

16 16389501 16389952 43.06 + U NOMO3 E
- D ABCC6 E

19 19238022 19238623 13.61 + U CSPG3 E
+ D KIAA0892 E
- U TM6SF2 E
- D HAPLN4 E

X 149544804 149545374 27.66 + U MTM1 I
+ D MTMR1 E
- U CD99L2 E

Randomly selected sequences (52) were validated by cold competition EMSAs as described in the Methods. Clones (24) with greater than 50% decrease in STAT5 DNA-binding to the [32P]-labeled probe were analyzed using CEAS. Fragments within 300 kb from coding sequences (20) are summarized above. (IDS: Immediate Downstream; U: Upstream; D: Downstream; I: Intron; E: Enhancer; chr: chromosome; dir: direction; % DNA-b.: % DNA-binding)