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. 2009 Jul 25;22(10):631–639. doi: 10.1093/protein/gzp043

Table II.

Calculated characteristics for phages with mutations in 12–19 amino acids of pVIII protein

Structure of 12–19 amino acids Phage concentrationa, vir ml−1 Kd, nM N lg Kd S+, Å2 ET, kcal mol−1 rc, Å HOMO, eV
DSLQASAT 3.2 × 1010 30.0 94 −7.52 171.887 17.393 6.282 −4.669
DSLHGQAM 1.6 × 1010 15.0 173 −7.82 162.731 11.586 6.504 −7.122
DQLNATAL 1.9 × 1010 17.8 255 −7.75 180.435 25.520 6.321 −6.297
AELTTRAE 2.5 × 1010 23.4 3404 −7.63 180.415 23.990 6.472 −3.777
DSLTLQAQ 4.0 × 1010 37.5 113 −7.43 176.641 21.736 6.769 −3.414
ADLTVQAN 5.0 × 1010 46.9 240 −7.33 174.261 16.383 6.772 −3.256
SNLEMMAT 6.0 × 1010 56.3 1043 −7.25 176.313 16.230 6.710 −2.804
DQLTVSAQ 6.0 × 1010 56.3 71 −7.25 187.865 22.031 6.938 −3.636
DTLTHEAT 8.0 × 1010 75.0 30 −7.12 185.024 17.715 6.510 −4.684
EDLTQRAL 27.0 × 1010 253.1 376 −6.60 201.178 18.395 6.985 −3.640

Kd, constant of dissociation. N, number of conformers. S+, area of the positively charged surface. ET, energy of torsion stresses. rc, radius of the described cylinder. HOMO, energy of the upper occupied molecular orbital. aPhage concentration (vir ml−1) estimated at the point of 50% binding of β-Gal in competition ELISA. The phage concentrations were determined by spectrophotometric measurement (for details, see Materials and methods).