. Author manuscript; available in PMC: 2009 Sep 12.

Published in final edited form as: J Comput Chem. 2005 Dec;26(16):1752–1780. doi: 10.1002/jcc.20292

Table 5.

Average RMS Deviations for Flexible Ligand Docking on 279 PDB Complexes.

Number of rot. bonds	Number of cases	Average RMSD top ranked pose (Å)	Average CPU time (min.)
0–3	51	1.23	0.1
4–6	92	1.39	0.4
7–10	48	1.47	0.9
0–8	164	1.34	0.3
0–10	191	1.37	0.4
0–20	263	1.78	1.1

Times are CPU-minutes on a 1.6-GHz AMD Opteron 242 processor.