Table 1.
Summary of digital allelotyping experiments.
| Samples | # mapped reads | # SNP mapped | # SNPs above thresholds | # SNP called | # hetSNPs | # genes | # snp with ASE | FDR | % SNP with ASE | # autosomal SNPs with mono-allelic expression |
|---|---|---|---|---|---|---|---|---|---|---|
| PGP1G | 6,390,846 | 25,265 | 19,582 | 19,561 | 4,761 | |||||
| PGP1L1 | 2,884,606 | 15,328 | 5,657 | 1,387 | 1,075 | 180 | 7.7% | 12.0% | 11 | |
| PGP1L2 | 4,092,513 | 15,875 | 6,513 | 1,586 | 1,198 | 217 | 7.3% | 12.7% | 14 | |
| PGP1K | 4,096,083 | 16,239 | 6,332 | 1,541 | 1,201 | 204 | 7.6% | 12.2% | 10 | |
| PGP1F1 | 7,392,218 | 17,355 | 7,686 | 1,785 | 1,333 | 317 | 5.6% | 16.8% | 10 | |
| PGP1F2 | 8,104,770 | 18,476 | 8,045 | 1,871 | 1,406 | 363 | 5.2% | 18.4% | 15 | |
| PGP9G | 8,613,616 | 25,748 | 22,106 | 21,993 | 5,539 | |||||
| PGP9F | 7,301,815 | 15,883 | 7,763 | 1,939 | 1,443 | 452 | 4.3% | 22.3% | 12 | |
| Hues37G | 7,919,357 | 24,578 | 18,505 | 18,450 | 4,493 | |||||
| Hues37C | 7,941,706 | 22,315 | 10,232 | 2,315 | 1,705 | 280 | 8.3% | 11.1% | 10 | |
| Hues38G | 8,059,825 | 24,553 | 18,565 | 18,546 | 4,467 | |||||
| Hues38C | 6,060,550 | 20,774 | 8,802 | 1,961 | 1,505 | 288 | 6.8% | 13.7% | 3 | |
| Hues56G | 8,921,985 | 25,450 | 20,695 | 20,627 | 5,389 | |||||
| Hues56C | 6,491,835 | 18,864 | 7,785 | 2,013 | 1,602 | 392 | 5.1% | 18.5% | 10 | |
| Hues58G | 7,145,720 | 24,621 | 18,651 | 18,617 | 4,931 | |||||
| Hues58C | 3,752,161 | 16,888 | 5,871 | 1,493 | 1,243 | 301 | 5.0% | 19.2% | 8 |
Note: PGP1G, PGP9G, Hues37G, Hues38G, Hues56G and Hues58G are genomic DNA, the others are cDNAs.